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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGACCCGGTTCTAGGTGATGAAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAGgtgatttaatccattcaagtcgctaaatataaaatgctggaaatttcttattgttgggcatttgggcatgtaaaagctgctgattgtaaaaatgaaagct...

Basic information

species Oryza sativa
transcript LOC_Os12g40830.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g40830.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G069758_T04 (Zea mays), 5'ss of exon 6
TTTGTGACCCGGTTCTAGGTGATGAAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAGgtgatttaatccattcaagt-cgcta---------aatata-----aaatgctggaaatttcttattgttgggcatttgggcatgtaaaagctgctgattgtaaaaatgaaagct
|||||||||| ||||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||||  |||||   ||   |||         |||| |     |||   ||| |||| ||| |  ||   | |||  | |||  ||  ||| |  ||               
TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGCTAATATCTGTTTATCAACAGAAGgtgatttagcccattttcgtattctatgattttccaatacattaccaaaatatgggaattgcttgtccttacactttttagaatggcaagtctgttattt---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|568331|gb|D39176.1|D39176
EST:     AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAG                         GTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTA
genomic: AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAGgtgatttaat ... tcatccttagGTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTA
EST: gi|427643|gb|D23776.1|D23776
EST:     ATCTGTTTATCAACAGAAG                         GTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTA
genomic: ATCTGTTTATCAACAGAAGgtgatttaat ... tcatccttagGTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTA
EST: gi|58661072|gb|CK049752.1|CK049752
EST:     AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAG                         GTTGTCCCAGTTGCTACAATGCTT
genomic: AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAGgtgatttaat ... tcatccttagGTTGTCCCAGTTGCTACAATGCTT