1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTCATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgccaaattactcattgcacagtgctccttcaagctagcatgttggcttgtctatatggctcacacacttcgattaattcaacattttctttt...
species | Oryza sativa |
transcript | LOC_Os12g40510.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAG GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCTEST: gi|163918192|gb|EG713168.1|EG713168
genomic: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgc ... gatttatcagGTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
EST: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAG GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCTEST: gi|300215900|gb|HO088526.1|HO088526
genomic: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgc ... gatttatcagGTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
EST: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAG GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCTEST: gi|25800868|gb|CA756829.1|CA756829
genomic: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgc ... gatttatcagGTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
EST: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAG GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCTEST: gi|29680333|gb|CB676608.1|CB676608
genomic: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgc ... gatttatcagGTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
EST: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAG GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCTEST: gi|86487223|gb|CI129856.1|CI129856
genomic: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgc ... gatttatcagGTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
EST: GCAACAAGGCTATATTGAGAGACAAGAG GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCTEST: gi|29673880|gb|CB670155.1|CB670155
genomic: GCAACAAGGCTATATTGAGAGACAAGAGgtattgatgc ... gatttatcagGTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
EST: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAG GTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
genomic: CATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgc ... gatttatcagGTTAAGCAGATGGTTGTTGCTACACTTGCTGAGTCTGGAATGAATCTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgccaaattactcattgcacagtgctccttcaagctagcatgttggcttgtctatatggctcacacacttcgattaattcaacattttctttt
- - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc