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ATGCTGACTCTCCTCCACGTCAGAATATTCCTGTTGAGAATGTTCCATCAGAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAGgtgcctatcggatgctatgtaaattggattatggttcattattttgtttacagtgttggattaacagaatctcctacctccatcctaccccccacccacc...
species | Oryza sativa |
transcript | LOC_Os12g40490.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAG AACTTGTGCTGGATGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTGEST: gi|29630464|gb|CB635473.1|CB635473
genomic: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAGgtgcctatcg ... gattttgcagAACTTGTGCTGGATGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTG
EST: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAG AACTTGTGCTGGATGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTGEST: gi|29680651|gb|CB676926.1|CB676926
genomic: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAGgtgcctatcg ... gattttgcagAACTTGTGCTGGATGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTG
EST: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAG AACTTGTGCTGGACGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTGEST: gi|29627991|gb|CB633002.1|CB633002
genomic: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAGgtgcctatcg ... gattttgcagAACTTGTGCTGGATGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTG
EST: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAG AACTTGTGCTGGATGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTG
genomic: GAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAGgtgcctatcg ... gattttgcagAACTTGTGCTGGATGCAAAAACCCAATTGGTCATGGACGTTTTCTTAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGACTCTCCTCCACGTCAGAATATTCCTGTTGAGAATGTTCCATCAGAGCCCCCAAGAGAGCTGCCTCCGATTCTATTTGCCTCAAGTGGATCCAGgtgcctatcggatgctatgtaaattggattatggttcattattttgtttacagtgttggattaacagaatctcctacctccatcctaccccccacccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc