1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGAGCTTGAGAGAGCCTATCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtagaaattcacttggttgacaccttatgtatggaagacaaaaggagtaatctagaccatttatcccttttgtcaaataacaatcttgcaccac...
species | Oryza sativa |
transcript | LOC_Os12g32230.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGAGCTGGTGTTGATGATCCTGGACTCAGAGAAAATAATAAGCGCTGCGG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACEST: gi|58692671|gb|CK081358.1|CK081358
genomic: CCGAGCTGGTGTTGATGATGCTGGACTCAGAG-AAATAATAAGCGCTGC-Ggtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGAC
EST: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACAEST: gi|89166490|gb|CI103776.1|CI103776
genomic: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
EST: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACAEST: gi|29671509|gb|CB667784.1|CB667784
genomic: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
EST: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACAEST: gi|89163717|gb|CI100607.1|CI100607
genomic: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
EST: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACAEST: gi|29639063|gb|CB644072.1|CB644072
genomic: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
EST: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACAEST: gi|88223338|gb|CI223187.1|CI223187
genomic: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
EST: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACAEST: gi|218504356|gb|FG958785.1|FG958785
genomic: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
EST: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCG GTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
genomic: TCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtag ... ttttacccagGTTAAAAGGAAGAAAGCTAAACACGCTGGGATGTTTGATATTGCTAAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGCTTGAGAGAGCCTATCCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGgtaagtgtagaaattcacttggttgacaccttatgtatggaagacaaaaggagtaatctagaccatttatcccttttgtcaaataacaatcttgcaccac
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agacaaaa