1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCAAAGCTGAAGCAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggtcactgccattctaatcatcctttatcatgcttgttgaatcaataccaaaattatggatgaaaacttgtaccaatgaactagattgatctgatgaacctctccgttgcgcag
species | Oryza sativa |
transcript | LOC_Os12g31850.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAACTNG-GNAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAG GTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGAEST: gi|218501335|gb|FG958585.1|FG958585
genomic: AGGAACT-GCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggt ... cgttgcgcagGTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGA
EST: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAG GTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGAEST: gi|29644126|gb|CB649133.1|CB649133
genomic: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggt ... cgttgcgcagGTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGA
EST: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAG GTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGAEST: gi|29614658|gb|CB619671.1|CB619671
genomic: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggt ... cgttgcgcagGTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGA
EST: CAGGAACTGCGGAATACTTGATCGAGCTCGAAGAACGGCGTTCGATCAAG GTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCANGAEST: gi|29665274|gb|CB661549.1|CB661549
genomic: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggt ... cgttgcgcagGTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGA
EST: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAG GTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGAEST: gi|218483875|gb|FG965316.1|FG965316
genomic: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggt ... cgttgcgcagGTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGA
EST: CAGGAACTGCGGAATACTTGATCGAGCTCGAAGAACGGCGTTCGATCAAG GTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGA
genomic: CAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggt ... cgttgcgcagGTGTTCGGATCAAGCACCTTCATAGGGCTTGGGATAGTGTTCTTCTCAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCAAAGCTGAAGCAGGAACTGCGGAATACTTGATTGAGCTCGAAGAACGGCGTTCGATCAAGgtaattcggtcactgccattctaatcatcctttatcatgcttgttgaatcaataccaaaattatggatgaaaacttgtaccaatgaactagattgatctgatgaacctctccgttgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC