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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacgaggcatagttatttagtaacgacgtgataccttttcttgtaatacttttga...

Basic information

species Oryza sativa
transcript LOC_Os12g24650.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G043893_T02 (Zea mays), 5'ss of exon 4
----GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacga--ggcatagttatttagtaacgacgtgataccttttcttgtaatacttttga----------------
    || || || || ||||| || |  ||||||||||| |||||| |||||||||| || || ||||| ||||||||||| |||||||| || || ||||||     | |||  |   |||       |||    ||||| |  |   |  | | |  | |||| ||| ||   | ||    ||| |  | |||  || |                 
ACAGGTCCACTTCATATCTGCCGCGTCTGAAAATATGATCAGTGGCTCAGGCATGAGACCCGGCGACATCGTGACTGCTTCCAATGGAAAGACCATCGAGgta-----catattttctcttgcagtagtaacgcgtttcagaacccgtcattgtcctgctaatttcgtagcg--ttcattgtctttgtattcatatgttagcacacatgcttcttcag

upper sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G043893_T01 (Zea mays), 5'ss of exon 6
GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacga--ggcatagttatttagtaacgacgtgataccttttcttgtaatacttttga----------------
|| || || || ||||| || |  ||||||||||| |||||| |||||||||| || || ||||| ||||||||||| |||||||| || || ||||||     | |||  |   |||       |||    ||||| |  |   |  | | |  | |||| ||| ||   | ||    ||| |  | |||  || |                 
GTCCACTTCATATCTGCCGCGTCTGAAAATATGATCAGTGGCTCAGGCATGAGACCCGGCGACATCGTGACTGCTTCCAATGGAAAGACCATCGAGgta-----catattttctcttgcagtagtaacgcgtttcagaacccgtcattgtcctgctaatttcgtagcg--ttcattgtctttgtattcatatgttagcacacatgcttcttcag

upper sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA02G36530.1 (Glycine max), 5'ss of exon 6
GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacgaggcatagttatttagtaacgacg-tgataccttttcttgtaatacttttga-----
|||||||||||   ||| || || || |||||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||||| ||||| |||||     | | ||| || |||        ||    |||  |||      |     |||| ||| || |      | |||   |||  || | |   |||       
GTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgaggatttaata-tattttttatttgtaa----attttgcacgt-taaaattaagtttttttgtgatatgactcatagtatttggtggattttgtttctgtttc

upper sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA16G19350.1 (Glycine max), 5'ss of exon 6
GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacgaggcatagttatttagtaacgacgtgataccttttcttgtaatacttttga--
||||||||||||  |||  | || || |||||||||||||| ||| | ||||||||||| || ||||| ||  |||| |||||||| ||||| ||||| |   | |  ||    ||| |   |   |   | | ||  | |    | || |  | || |  ||  |||  | ||   | |  || | |   ||| |  
GTTCATTTTATTGTTGCAACCTGTGAGAATATGATAAGTGGAACAAGTATGAGGCCTGGAGATATTGTCACAACTTCAAATGGAAAGACTATAGAGgtgtggatttactatattttttatttgtagattttgtacattaaat-ttatgctttttaatgtgatactgactcg-tagtatctggtggattttgtttcagt

upper sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA17G08150.1 (Glycine max), 5'ss of exon 6
GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacgaggcatagttatttagtaacgacgtgataccttttcttgtaatacttttga--
||||||||||||  ||| || || || |||||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||||| ||||| ||||| |   | |  ||    ||| |   |   |   | | ||  | |    | |  |  | || |  ||  |||  | ||   | |  || | |   ||| |  
GTTCATTTTATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgtggatttactatattttttatttgtagattttgtacattaaat-ttatgttttttaatgtgatactgactcg-tagtatctggtggattttgtttcagt

upper sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA19G22730.1 (Glycine max), 5'ss of exon 6
GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaaca-atattca-gcatacacgaggcatagttatttagtaacgacgtgataccttttcttgtaatacttttga
|||||||||||   ||| || || || |||||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||||| ||||| |||||   | | |  ||      |         |    ||  || | | |    ||  |   |  | | |||  ||    ||     |  | |    | ||||  
GTTCATTTTATAGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGAGATATTGTCACAGCTTCAAATGGAAAGACTATAGAGgtgagaatttattaggttcatattgttttgatttgtacgcatgtaaatttaagttactat-gtatggtattgagacaattggcctattgggtggattttta-

upper sequence: LOC_Os12g24650.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 6
GTTCATTTTATTTCTGCTGCATGCGAAAATATGATAAGTGGCACAGGCATGAGGCCTGGTGACATTGTGACTGCTTCTAATGGAAAAACTATTGAGgtattattcttataatactttgagaagacaacaatattcagcatacacgaggcatagttatttag---taacgacgtgataccttttcttgtaatacttttga
|| ||||| |||  ||| || || || |||||||||||||| ||||||||||||||||| ||| |||| || ||||| |||||||| || ||||||||  | |  || |  | |    | |  |||||  | |||| | ||   ||||  | |||     |   | |  || |||||  | |         |       
GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATAAGTGGAACAGGCATGAGGCCTGGAGACGTTGTCACAGCTTCAAATGGAAAGACAATTGAGgtgctttctttgttttgcaggaaaattacaac--ttttcaacttaggagaggttttgttggaaggcttttattacttgataggtgtcaagaatggatgcaca-