1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAAAAGGGAACACTGGGTGATGCTTCTGCACTCAAGCCAACACTGATGACCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcactttaagctgtttcgtccaatgttcttcatctctttcttaatttactgattgttatttttcatattgggatggctttag
species | Oryza sativa |
transcript | LOC_Os12g07110.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAG GTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAATEST: gi|29614988|gb|CB620001.1|CB620001
genomic: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcact ... atggctttagGTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
EST: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAG GTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAATEST: gi|29675500|gb|CB671775.1|CB671775
genomic: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcact ... atggctttagGTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
EST: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAG GTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAATEST: gi|86829547|gb|CI286740.1|CI286740
genomic: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcact ... atggctttagGTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
EST: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAG GTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAATEST: gi|58030548|gb|CX728091.1|CX728091
genomic: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcact ... atggctttagGTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
EST: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAG GTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAATEST: gi|29672201|gb|CB668476.1|CB668476
genomic: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcact ... atggctttagGTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
EST: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAG GTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAATEST: gi|29614945|gb|CB619958.1|CB619958
genomic: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcact ... atggctttagGTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
EST: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAG GTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
genomic: CCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcact ... atggctttagGTGGATACAAAGGGTGGTGTAGCAAAGCAGTTATTTGATGTTGCCTATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAAGGGAACACTGGGTGATGCTTCTGCACTCAAGCCAACACTGATGACCGCTGTACCTGCTATACTTGATCGTGTTCGTGATGGTGTGAGAAAGAAGgtactgcactttaagctgtttcgtccaatgttcttcatctctttcttaatttactgattgttatttttcatattgggatggctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG