1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATCAAGTGAGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAGgtgagttcattggatgttctcattctgcttgttcaccacccatgctctgttatcaagcatcttctcaattttaaagttgtgtgttttcctcaattttaac...
species | Oryza sativa |
transcript | LOC_Os12g05650.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAG GTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAEST: gi|86823074|gb|CI253990.1|CI253990
genomic: AGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAGgtgagttcat ... aaactctcagGTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAA
EST: ATAAAAGCTCCTGAGAAGAAG GTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAEST: gi|86823113|gb|CI254016.1|CI254016
genomic: ATAAAAGCTCCTGAGAAGAAGgtgagttcat ... aaactctcagGTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAA
EST: AAAGCTCCTGAGAAGAAG GTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAEST: gi|88240853|gb|CI238704.1|CI238704
genomic: AAAGCTCCTGAGAAGAAGgtgagttcat ... aaactctcagGTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAA
EST: AGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAG GTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAEST: gi|55408732|gb|CV721108.1|CV721108
genomic: AGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAGgtgagttcat ... aaactctcagGTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAA
EST: GGAATAAAAGCTCCTGAGAAGAAG GTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAAEST: gi|5900741|gb|AU078396.1|AU078396
genomic: GGAATAAAAGCTCCTGAGAAGAAGgtgagttcat ... aaactctcagGTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAA
EST: AGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAG GTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAA
genomic: AGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAGgtgagttcat ... aaactctcagGTTGATGTTGATGTTGTAACACATGTAATTGTTGAAGATGATGGACCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCAAGTGAGAATTTAGCCATGGGTGAATTTTTTGGAATAAAAGCTCCTGAGAAGAAGgtgagttcattggatgttctcattctgcttgttcaccacccatgctctgttatcaagcatcttctcaattttaaagttgtgtgttttcctcaattttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccacc