1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGACATGGCCTTAGCTGTGAAAAATCCCTGCCATCTCAACATGGCCGCATGCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttattcttctacattgcataaaatttactcttacactcatgctttaacattacatgtataacacaagaaaaaactgaatttgatttgtcattcag...
species | Oryza sativa |
transcript | LOC_Os12g05090.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|218494250|gb|FG955171.1|FG955171
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|58693080|gb|CK081767.1|CK081767
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|87010734|gb|CI312426.1|CI312426
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|88836464|gb|CI078361.1|CI078361
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: CCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|88969353|gb|CI382899.1|CI382899
genomic: CCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|24208446|gb|AU225473.1|AU225473
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|88830105|gb|CI074777.1|CI074777
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: AGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|58688118|gb|CK076805.1|CK076805
genomic: AGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAEST: gi|58612135|gb|CK039847.1|CK039847
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
EST: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATT GTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
genomic: GCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttatt ... cattcttcagGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACATGGCCTTAGCTGTGAAAAATCCCTGCCATCTCAACATGGCCGCATGCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAGTGTACAATTgtatgttattcttctacattgcataaaatttactcttacactcatgctttaacattacatgtataacacaagaaaaaactgaatttgatttgtcattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa