1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAAGTGGACAAAGATTGTGAGTTTCTGGAGCAAGAGAGAATTATGGATTACAGTCTTCTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGATATgttcacactatagtgattgtttcgaatacttataaattttttaggagatgcattttaagtcatgggcctgaaaatacttttttcttggttacagacag
species | Oryza sativa |
transcript | LOC_Os12g04700.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCGATGCAAAGACAG CAGCAGTCCTGACAACGAGACTACTCAAACTGCTCTTGAAGATGAGGAAAAEST: gi|86498254|gb|CI140887.1|CI140887
genomic: ACCGATGCAAAGATATgttcacacta ... ttacagacagCAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAA
EST: ACTTCAAAGACCGATGCAAAGACAG CAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAAEST: gi|87016238|gb|CI271649.1|CI271649
genomic: ACTTCAAAGACCGATGCAAAGATATgttcacacta ... ttacagacagCAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAA
EST: GCGTTCACTTCAAAGACCGATGCAAAGACAG CAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAAEST: gi|86437460|gb|CI119182.1|CI119182
genomic: GCGTTCACTTCAAAGACCGATGCAAAGATATgttcacacta ... ttacagacagCAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAA
EST: CTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGACAG CAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAA
genomic: CTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGATATgttcacacta ... ttacagacagCAGCAGTCCTGACAACGAGACAACTCAAACTGCTCTTGAAGATGAGGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGTGGACAAAGATTGTGAGTTTCTGGAGCAAGAGAGAATTATGGATTACAGTCTTCTGGTTGGCGTTCACTTCAAAGACCGATGCAAAGATATgttcacactatagtgattgtttcgaatacttataaattttttaggagatgcattttaagtcatgggcctgaaaatacttttttcttggttacagacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG