1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGTACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATTgtaaattacaaatctataaatagcaaattgcatctatatatacgatgtaagaactctgtttcatccatgtcatctaaattttag
species | Oryza sativa |
transcript | LOC_Os12g03860.6 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATT GTGAGCACAGCATGGGGGATAGGTCTTEST: gi|33797096|gb|CF324414.1|CF324414
genomic: ACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATTgtaaattaca ... taaattttagGTGAGCACAGCATGGGGGATAGGTCTT
EST: ACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATT GTGAGCACAGCATGGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGAEST: gi|33692622|gb|CF320861.1|CF320861
genomic: ACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATTgtaaattaca ... taaattttagGTGAGCACAGCATGGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGA
EST: ACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATT GTGAGCACAGCATGGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGA
genomic: ACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATTgtaaattaca ... taaattttagGTGAGCACAGCATGGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTACTCTATCGAAGTTTGCCGAGCTGAACATCAACCTTTGGGCCTATCAATTgtaaattacaaatctataaatagcaaattgcatctatatatacgatgtaagaactctgtttcatccatgtcatctaaattttag
- - - - - - - - - - - AGCTGA