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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGGTATTATGAGTTACTCGAGgtatgggttgattaatgtgaaatgggttttttcttttggtctcggcatatctcaccatttgtttacttcaaaatgttcatgaaag

Basic information

species Oryza sativa
transcript LOC_Os12g03480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g03480.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA19G30450.1 (Glycine max), 5'ss of exon 8
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGGTATTATGAGTTACTCGAGgtatgggttgattaatgtgaaatg-ggttttttcttttggtctcggcatatctcaccatttgtttactt-caaaatgttcatgaaag----------------------------------
|||   | | ||||| |||||||| ||||||||||| |||| ||| ||||| |||   |||||||| |||||||| ||||| ||||||||||| ||| | ||| | |    || |  |  | ||  | ||    || || | |  | || |      |||  | || ||     ||| |  |||||                                   
GAAAACATCCATTGGACCATGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGTTATTATGAGTTTCTCCAAgtaagtgcctctttacatatattgtagcttaggattatgatgttcgtatctagtcgaattactctagttgtgctatgctagtgaaatgatatatataattattattataatttttgagcag

upper sequence: LOC_Os12g03480.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA03G00630.1 (Glycine max), 5'ss of exon 7
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGGTATTATGAGTTACTCGAGgtatgggtt---------gattaatgtgaa-atgggttttttcttttggtctcggcatatctcaccatttgtttacttcaaaatgttcatgaaag
||| || ||  |||| ||||||||||||||||| ||||||||||||||||| ||| | || ||||  ||||| ||  |||| |  | ||||   ||  | ||| || ||          | | |||   | |||| | |||  ||||  |||      ||      ||   | || ||     |  ||  | |  
GAAAGACACAGTTGGACCATGGGAAGAGAGACCAGGACACTATGGAGATGTATGGAATTATTGGAGTGATGACGGATTTGGTTTCTTTGAGGGCCTTCAAgtagggtttccttttataaactcatgcatatatggatatttaatttt--tcttattgaattgagaaatcgatctattt---gtttctcgagcag-

upper sequence: LOC_Os12g03480.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA03G27460.3 (Glycine max), 5'ss of exon 8
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGGTATTATGAGTTACTCGAGgtatgggttgattaatgtgaaatg-ggttttttcttttggtctcggcat---atctcaccatttgtttacttcaaaatgttcatgaaag----------------------------------
||| | | || |||| |||||||| ||||||||||| |||| ||| ||||| |||   |||||||| |||||||| ||||| ||||||||||| ||| | ||| | |    ||    |  | ||  | |      | || | |    ||    |   |  | |  | |  |     ||| |  |||||                                   
GAAAGCATCTGTTGGACCATGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGCTATTATGAGTTTCTCCAAgtaagtgcctcttttcatatattgtagctgaggaatatgatgttcatatctagttgaattactcttgttttgtgctatgctagtgaaatgatatatattattattattattatttttgagcag

upper sequence: LOC_Os12g03480.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT5G26120.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGGTATTATGAGTTACTCGAGgtatgggttgattaatgtgaaatgggttttttcttttggtctcggcatatctcaccatttgtttacttcaaaa----tgttcatgaaag
||| |||||  |  |  | ||||||||||||||||| || ||||| ||||| ||| | |||||||| ||||||||||||||  | | ||| ||  |  | ||| |||   |||  | |    | |||| | | |       |     | | |||  | ||  | |  || |||    | ||  |   ||
GAAAGAAACCGTGAGAGCTTGGGAAGAGAGACCTGGCCATTATGGTGATGTTTGGAAGTACTGGACTGATGATGGCCTTGGCCACTTTGAATTCTTTCAAgtaaggg---atttttttcttttcggttctatatcca---tttaaagtgtttcaataattactaagctcgaaacaaatatttcttgtag

upper sequence: LOC_Os12g03480.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGACACTATGGAGATGTCTGGCACTACTGGACGGATGATGGCCTTGGGTATTATGAGTTACTCGAGgtatgggt--------tgattaatgtgaaatgggttttttct--tttggtctcggcatatctcaccatttgtttacttcaaaatgttcatgaaag--------------
|||  | || ||||| || ||||| |||||||||||||||| ||| ||||| ||| | |||||||| |||||||| ||||| |||| |||||| ||  | |||||  |        ||   | |||||||    || ||| |   || ||    | | |  |  |      |     | |     || |  || |              
GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtag