1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TAAAGGAACAAATAGAACCTCAAGGCTTCAAATAACAACTACCAAGAAGGGAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattatattttgttatcaaacttcgttactggaaaaggaaaacgatatcatggactttttcatgctatctctatatagtgtatgataccacttaaatcttcatgggctttttctactgcttccaacatttcttttacacattcag
species | Oryza sativa |
transcript | LOC_Os12g03470.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAG GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCAEST: gi|29627933|gb|CB632944.1|CB632944
genomic: GTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCA
EST: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGCCTGCAGACACTTACAAG GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCAEST: gi|29624168|gb|CB629179.1|CB629179
genomic: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCA
EST: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGCCTGCAGACACTTACAAN GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACEST: gi|33677669|gb|CF305908.1|CF305908
genomic: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGAC
EST: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAG GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCAEST: gi|55410431|gb|CV722807.1|CV722807
genomic: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCA
EST: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAG GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTATATTCCEST: gi|29667031|gb|CB663306.1|CB663306
genomic: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTA-AAACC
EST: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAG GGACATGGTTTTCGCACAGAACTAATATCTATGATEST: gi|29630007|gb|CB635016.1|CB635016
genomic: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGAT
EST: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGCCTGCAGACACTTACAAG GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCAEST: gi|33675310|gb|CF303549.1|CF303549
genomic: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCA
EST: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAG GGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCA
genomic: GAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattata ... acacattcagGGACATGGTTTTCGCACAGAACTAATATCTATGATGTTGGACTTAAAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAGGAACAAATAGAACCTCAAGGCTTCAAATAACAACTACCAAGAAGGGAGTTGTATGGTTTGATCAAGTCTCTCTCATGTCTGCAGACACTTACAAGgtacattatattttgttatcaaacttcgttactggaaaaggaaaacgatatcatggactttttcatgctatctctatatagtgtatgataccacttaaatcttcatgggctttttctactgcttccaacatttcttttacacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG