1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGACCTGCTAAAATTAGAACACAAGGTTTCGTCGTTTACTGATGATCCAAAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatctcctctgaaccattcttctcccaaattacatggttcctcagagtaagataataaatatcttgtcaagtccaattatctttagcaagcataagcatttgatgtttaattggactaacaagtatcatacttatgtcag
species | Oryza sativa |
transcript | LOC_Os12g01449.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|89198800|gb|CI003537.1|CI003537
genomic: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: CTCTCAAGAAGATGTATTCCTTGCTTGAAAC GGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|86480775|gb|CI123408.1|CI123408
genomic: CTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|29665532|gb|CB661807.1|CB661807
genomic: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|88980888|gb|CI021016.1|CI021016
genomic: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: GAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|29675785|gb|CB672060.1|CB672060
genomic: GAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|88830857|gb|CI079291.1|CI079291
genomic: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: GAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|86481658|gb|CI124291.1|CI124291
genomic: GAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATCEST: gi|29674414|gb|CB670689.1|CB670689
genomic: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
EST: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAAC AGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
genomic: AAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatct ... cttatgtcagAGTGGAGCAGAGTGTTTATGCGCTACTTCGTACTAGAGACATGGCCATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACCTGCTAAAATTAGAACACAAGGTTTCGTCGTTTACTGATGATCCAAAGCTTGCATGTGAAGAAGCTCTCAAGAAGATGTATTCCTTGCTTGAAACgtaagcatctcctctgaaccattcttctcccaaattacatggttcctcagagtaagataataaatatcttgtcaagtccaattatctttagcaagcataagcatttgatgtttaattggactaacaagtatcatacttatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG