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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGAAATATCGAATTCCCACTACCATTCGGTAGAGTTCTCAGTTCTACAGAAGGCTTTATCCATGACTTGGATGAGAAGgtatccacatctcaaattacacgtttcacatttcaagcctcctccccaatcttttttaagtatgagttgcctgtataatatcatcagtaggtttgcacatgaattcagataggagtgctggcagtctggctcagcactatatgtttttttgaattatttgctaaatgtgatataatgaccttattctttcag

Basic information

species Oryza sativa
transcript LOC_Os11g47120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g47120.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G340672_T01 (Zea mays), 5'ss of exon 5
GTGGGGAAATATCGAATTCCCACTACCATTCGGTAGAGTTCTCAGTTCTACAGAAGGCTTTATCCATGACTTGGATGAGAAGgtatccacatctcaaattacacgtttcacatttcaagcctcctccccaatcttttttaagtatgagttgcctgtataatatcatcagtaggtttgcacatgaattcagataggagtgctggcagtctggctcagcactatatgtttttttgaattatttgctaaatgtgatataatgaccttattctttcag
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GTGGGGAGGTATAGAATTCCCTCTACCTTTTGGAAGAGTACTCAGTCCTACAGAAAGTTTCATCCATGAACTAGATGAGAAGgtattgatctctgggct----------atgtttttatctttctttc---tttccctgaggtct--atcacctataaaata--atcagt---ttc---catga---caaatttgggatctg-cagtgt-----------------------------------------------------------------