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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATAACGACATTTGTCCATTGACTATTAGTAACACACTGCTACAGTCATGCTACTTGAGAAACACAGAATGGGCTTGTGGTGTGGCAGTTTATACAGgtaccttgaactagctttctcctaattcacaagactgatgtgtacctctttttccatcaatagtattatatactccaatgaagctgaagttgttgtaaaa...

Basic information

species Oryza sativa
transcript LOC_Os11g25980.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g25980.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G865163_T01 (Zea mays), 5'ss of exon 5
ATTGATAACGACATTTGTCCATTGACTATTAGTAACACACTGCTACAGTCATGCTACTTGAGAAACACAGAATGGGCTTGTGGTGTGGCAGTTTATACAGgtaccttg--aactagctttctcctaattcacaagactgatgtgtacctctttttccatcaatagtattatatactccaatgaagctgaagttgttgtaaaa
|||||||| |||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||   |     ||| |  |  ||||   ||| |                                                               
ATTGATAATGACATTTGCCCATTGACTATTAATAACACATTGCTGCAGTCATGCTACTTGAGAAATACAGAATGGGCTTGTGGTGTAGCAGTTTATACAGgtaacttgttgatactatttgttttgtttcatgtgacag---------------------------------------------------------------

upper sequence: LOC_Os11g25980.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G33340.1 (Glycine max), 5'ss of exon 6
ATTGATAACGACATTTGTCCATTGACTATTAGTAACACACTGCTACAGTCATGCTACTTGAGAAACACAGAATGGGCTTGTGGTGTGGCAGTTTATACAGgta---ccttgaactagctttctcctaattcacaagactgatgtgtacctctttttccatcaatagtattatatactccaatgaagctgaagttgttgtaaaa
                                                ||||| |||||||||||||| || ||||| ||||| ||||| || |||||||| |   || || |   | | | |   |||||     |||| ||| ||| | |||                                                 
------------------------------------------------TCATGTTACTTGAGAAACACTGAGTGGGCATGTGGAGTGGCTGTGTATACAGGCAAGCCCATgtatatgatgtatta-aattcttggaactg-tgtatacttttttag-----------------------------------------------

upper sequence: LOC_Os11g25980.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G37090.1 (Glycine max), 5'ss of exon 6
-----------------------------------------------------ATTGATAACGACATTTGTCCATTGACTATTAGTAACACACTGCTACAGTCATGCTACTTGAGAAACACAGAATGGGCTTGTGGTGTGGCAGTTTATACAGgtaccttgaactagctttctcctaattcacaagactgatgtgtacctctttttccatcaatagtattatatactccaatgaagctgaagttgttgtaaaa
                                                     |||||||| || || || || || || ||||  |||||  | || |||||||| |||||||||||||| |||||||| ||||| ||||| || |||||||                                                                                                    
CAGATAAAGACATCAGGAGATTTGATGCAAACATGCGGCTGTTTCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACCATTCTTCAgtcatgttacttgagaaacactgaatgggcatgtggagtggctgtgtatacag----------------------------------------------------------------------------------------------------