1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTAAGGATGGGCATAAGAGAGATTTTGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgttttctccttgtttatcatttatcattatttatggaacttggtattctttgtttaggtagttgcttcctgtggaaagcagatatgtttagatca...
species | Oryza sativa |
transcript | LOC_Os11g14430.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTAAGTGCACTGAAGGCAGTTAAAGGAAGTGAAAAATATGAATTCGATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTGEST: gi|29639969|gb|CB644978.1|CB644978
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
EST: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTGEST: gi|88394072|gb|CI684740.1|CI684740
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
EST: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTGEST: gi|218479912|gb|FG956819.1|FG956819
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
EST: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGTGAAAAATATGAATTCGATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTGEST: gi|88326998|gb|CI676114.1|CI676114
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
EST: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTGEST: gi|88577946|gb|CI674563.1|CI674563
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
EST: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTGEST: gi|29640012|gb|CB645021.1|CB645021
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
EST: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTGEST: gi|38473107|gb|CF957239.1|CF957239
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
EST: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGTGAAAAATATGAATTCGATG GGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
genomic: ATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgtttt ... tgaaacacagGGCAAGTGCTGGAAGTATCCATGGCCAAACCTTTGGGTGACAAGAAACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAGGATGGGCATAAGAGAGATTTTGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCACTGAAGGCAGTTAAAGGAAGCGAAAAATATGAATTTAATGgtaatgttttctccttgtttatcatttatcattatttatggaacttggtattctttgtttaggtagttgcttcctgtggaaagcagatatgtttagatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA