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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATAAATTTAGAAAAGCAACATCATCTCAATGGTTATACAAACCACAAGTTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagtttttaaagtttgaaatttcatccaaataaattctggtttaaataatgttggtttctgagtggggtttgttttgcatgcccatttgtttcttt...

Basic information

species Oryza sativa
transcript LOC_Os11g05930.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g05930.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G135446_T02 (Zea mays), 5'ss of exon 3
AGATAAATTTAGAAAAGCAACATCATCTCAATGGTTATACAAACCACAAGTTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagtttttaaag----tttgaaatttcatccaaataaattctggtt--taaataatgttggtttctgagtggggtttgttttgcatgcccatttgtttcttt
|||  || || | ||| |||||  |||  |||||||| |  || ||  | || |  || |||||||||||||||||||| ||||| |||||||| ||||||||||   |  | | |    ||| ||| || |  | ||  |||| || ||  ||  || |  | |    ||  |||   || | |   ||||     | | |    
AGACCAACTTGGGAAAACAACAGTATCGTAATGGTTACAAGAATCAAGAATTCAGGGAAAAAGATATCTTTAATCACTCGAATTCTTCTGCCTTCTCGAGgtactttgtgctgatggattttttaaactttagtctaa--aattttgattggtatctagttcttgaacgtggctggaaattatctgaaatgcatggctttct----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58609126|gb|CK037159.1|CK037159
EST:     TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAG                         GTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
genomic: TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagttt ... cctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
EST: gi|29638597|gb|CB643606.1|CB643606
EST:     TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAG                         GTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
genomic: TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagttt ... cctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
EST: gi|33382037|gb|CF197380.1|CF197380
EST:     TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAG                         GTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC
genomic: TTGAATGAGAAAGATATCTTTAATCACTCAAATTCCTCTGCCTTTTCGAGgtactagttt ... cctgtcacagGTATGGTAATAAGAGGATAGAATCATCAGCTCAACGGCCATTTCCCCCTTC