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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGAATCACATAAGAAAAGTTTATTCAGAAATTGGCCATTGATGTCATCTATCATCACATATTGTGTCTTCTCCCTTCACGACACCGCATATAGCGAGgtagtaacagttattaatgtgatatgaaattgttattatgtaacctctctatgtcaaataattatcttgcctttctccataaagagcatgtttcttgctc...

Basic information

species Oryza sativa
transcript LOC_Os11g04030.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678071|gb|CB674346.1|CB674346
EST:     CTTCACGACACCGCATATAGCGAG                         ATATTTTCTCTGTGGACTGTAAGTGATAGAAAATATGGTGGACTCAGCTTT
genomic: CTTCACGACACCGCATATAGCGAGgtagtaacag ... ttaacatcagATATTTTCTCTGTGGACTGTAAGTGATAGAAAATATGGTGGACTCAGCTTT
EST: gi|29680055|gb|CB676330.1|CB676330
EST:     ACACCGCATATAGCGAG                         ATATTTTCTCTGTGGACTGTAAGTGATAGAAAATATGGTGGACTCAGCTTT
genomic: ACACCGCATATAGCGAGgtagtaacag ... ttaacatcagATATTTTCTCTGTGGACTGTAAGTGATAGAAAATATGGTGGACTCAGCTTT