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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAAGAAATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCAAGGTTGCCTGATAATCCCATTgtaagatccatatggaatctcttttacctcttacaccgcacctgttctttttattaatatggatattaaattttcatgaatgtatgttttggttcatatttcag

Basic information

species Oryza sativa
transcript LOC_Os11g01140.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g01140.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G001457_T02 (Zea mays), 5'ss of exon 5
GAGGAAAGAAATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCAAGGTTGCCTGATAATCCCATTgtaagatccatatgga-atctcttttacctcttacaccgcacctgttctttttattaatatggatattaaattttcatgaatgtatgttttggt--tcatatttcag-----------------
|| |||||||||||| | ||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| || || ||||| || |||||||| |||||||||   |     | ||  ||| | ||| | ||| | |   |||||||| |||  | || |||||  |  |  ||| |   |    |   ||  | ||||||                    
GAAGAAAGAAATGAGAAAGGGCATAGATTTGGCTACCACACTTGAACGTATTGAAAAGAATTTTGTCATCACCGACCCGAGGTTACCAGATAATCCAATTgtaagacaaaagctcacataccttctgcctttaacatcac---tgttctttctatcgaaatagatatcgacctaccattatattgaactacagtcattatattttttttgggtgaatgtcacag

upper sequence: LOC_Os11g01140.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 7
GAGGAAAGAAATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCAAGGTTGCCTGATAATCCCATTgtaagat--ccatatggaatctcttttacctct----tacaccgcacctg------ttcttttt---attaatatggatattaaat-----tttcatgaatgtatgttttggttca-tatttcag
|| ||| |||| ||| | |||| | ||  | ||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| || || |||||||||||||   | | |   ||  | ||||   ||    | || |  |  ||      |||| | |   ||||||  |  || || |       || |      || |||||  ||   | || |||
GAAGAAGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAGAACTTTGTCATCACTGATCCAAGGCTGCCGGACAACCCCATTgtaagatgatcctttttgataccatttaatactccaatgcaacaaaaatggtgaatttctctatgggattaattcgtgtactagagatgagcttaagacgattacgtttttatttggttttccag

upper sequence: LOC_Os11g01140.3 (Oryza sativa), 5'ss of exon 6
lower sequence: AT3G45780.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGGAAAGAAATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCAAGGTTGCCTGATAATCCCATTgtaagatccatatggaatctcttttacctcttacaccgcacctgttct-ttttattaatatggatattaaattttcatgaatgtatgttttggttcatatttcag-
    || |||||||| | |||||| ||  | ||||||||||| |||||||| ||||||||||| |||||||| ||||| ||| | || ||||||||||||||||||     |   |   | |   |      | ||      |||| | ||| |||   || | | | |||   |    | ||| || ||||    || ||||   
ACAAAAGGAAATGAGAAAGGGTATTGATCTAGCTACTACACTCGAACGTATCGAGAAGAATTTCGTCATCACTGATCCTAGGCTTCCCGATAATCCCATTgtaaga-----acaaatgttttagaaaaatggaaactttttttgttatgtttcatttcgattggtctgaaaacgt----attgtttgctttgtcctatgtttctag

upper sequence: LOC_Os11g01140.3 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 6
GAGGAAAGAAATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCAAGGTTGCCTGATAATCCCATTgtaagatccatatggaatctcttttacctcttacaccgcacctgttctttttattaatatggatat-taaattttcatgaatgtatgttttggttcatatttcag----------------------
    |  |||||||| || ||||| ||  |||| || || ||||||||||| |||||||| ||||||||||| ||||| ||  ||||||||||||||||||| |||   |||    |  |  ||     ||   | |       || |   |  | || ||   ||  | ||    |  ||| |  | |||| ||  | |   ||                      
ACAAAGGGAAATGAGAAGAGGTATTGATCTGGCCACCACGCTTGAACGTATAGAGAAGAACTTTGTCATCACTGATCCCAGACTGCCTGATAATCCCATTgtgagaataatacttcaaattattggttactgcaatcatgttctttttaaattatgatttgagcatgcacataagaagaaatatgggatttg-tttgtttgatagttctaactttttgaattttcag

upper sequence: LOC_Os11g01140.3 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S174_62V6.2 (Physcomitrella patens), 5'ss of exon 3
GAGGAAAGAAATGAGGAGGGGTATAGACTTGGCTACTACACTTGAACGTATTGAGAAGAATTTTGTCATCACAGATCCAAGGTTGCCTGATAATCCCATTgtaagatcca--tatggaatctcttttac--ctcttacaccgcacctgttctttttattaatatggatattaaattttcatgaatgtatgttttggttcatatttcag
 |     |  ||  |  | || || ||||||||||| ||||| || || ||||| ||||| || ||||| || |||||  || | |||||||||||||||||||| |  |    |||  |  || | |   ||| | |||   || ||      ||||   |     ||   |||| |      | ||                    
CACTCTGGGCATCCGTCGAGGAATCGACTTGGCTACAACACTGGAGCGAATTGAAAAGAACTTCGTCATAACTGATCCCCGGCTTCCTGATAATCCCATTgtaagttgtagtcttggcgttgctatcatagctcatgcacaatacatgga----ttatctgtggcagtaactaattcttggcgctctacag-----------------