1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTAGGACGAGTGGTAGAGCTAGAGCCAATATTGACCATATCAATATTGCCCAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccctcctcgatctgtattagctcctccgtccttgcttcttttgtcactatgaaatgaaatcatcgatatttcaaccattattaacttttagacg...
species | Oryza sativa |
transcript | LOC_Os10g42780.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88905858|gb|CI002196.1|CI002196
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88669920|gb|CI724036.1|CI724036
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88665559|gb|CI715715.1|CI715715
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88503616|gb|CI431122.1|CI431122
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88676201|gb|CI730314.1|CI730314
genomic: CTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88674712|gb|CI728825.1|CI728825
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88674598|gb|CI728711.1|CI728711
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88668108|gb|CI722847.1|CI722847
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88674693|gb|CI728806.1|CI728806
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|89171620|gb|CI720679.1|CI720679
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88671121|gb|CI725237.1|CI725237
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88673791|gb|CI727904.1|CI727904
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|86878387|gb|CI319620.1|CI319620
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGC-GTGGTTGTCCTCACGGGGCTGATCGEST: gi|88670306|gb|CI724422.1|CI724422
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88671301|gb|CI724347.1|CI724347
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88908739|gb|CI714881.1|CI714881
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCACTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|29676079|gb|CB672354.1|CB672354
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88669371|gb|CI723289.1|CI723289
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|29626168|gb|CB631179.1|CB631179
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88595273|gb|CI714094.1|CI714094
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88905613|gb|CI712912.1|CI712912
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|86871131|gb|CI328333.1|CI328333
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: ACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88675191|gb|CI729304.1|CI729304
genomic: ACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|88673702|gb|CI727815.1|CI727815
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCGEST: gi|29626167|gb|CB631178.1|CB631178
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
EST: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAG GTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
genomic: CAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccct ... gggtgggcagGTGTAAATACTTCAGTAACCGCAGCGGTGGTTGTCCTCACGGGGCTGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGGACGAGTGGTAGAGCTAGAGCCAATATTGACCATATCAATATTGCCCAGGTGTATAACCGTGGCATTAGCTTTGAGGGTAGTTTCTCTCTTTGAAGgtttgtccctcctcgatctgtattagctcctccgtccttgcttcttttgtcactatgaaatgaaatcatcgatatttcaaccattattaacttttagacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG