1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAACTGGTGTCGAAGGAAGGATCATAAATGTGTCGTCTTCGGGGCACATTTTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGgtaattaataaattccgagactctaaaaattaggactaactagctaggccatttttgcatttcaaggagcatagatatgatgtcgattctaacaatataa...
species | Oryza sativa |
transcript | LOC_Os10g40030.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAG ATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCAEST: gi|38471413|gb|CF955544.1|CF955544
genomic: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGgtaattaata ... atcttaccagATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCA
EST: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAG ATTCTCCACTTATATTGCTTACGEST: gi|38477927|gb|CF962060.1|CF962060
genomic: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGgtaattaata ... atcttaccagATTCTCCACTTATATTGCTTACG
EST: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAG ATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCAEST: gi|3764142|gb|AU030642.1|AU030642
genomic: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGgtaattaata ... atcttaccagATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCA
EST: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAG ATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCAEST: gi|29656760|gb|CB653035.1|CB653035
genomic: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGgtaattaata ... atcttaccagATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCA
EST: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAG ATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCA
genomic: TTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGgtaattaata ... atcttaccagATTCTCCACTTATATTGCTTACGGCCAGTCCAAGCTTGCCAACATTTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTGGTGTCGAAGGAAGGATCATAAATGTGTCGTCTTCGGGGCACATTTTGACCTATCCTGAAGGGATATGTTTCGATAGTGTAAAAGATCTTTCGAGgtaattaataaattccgagactctaaaaattaggactaactagctaggccatttttgcatttcaaggagcatagatatgatgtcgattctaacaatataa
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