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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATAATGCTGGAATCATGACAAGGAACTGCACACGCTCCATTGACGGCCTGGAATTGCAATTTGCAACAAATCACATCGgtacgagaaattacacagcatttcttcatgcatctcaatcttattaacggattagctgcttgagtgatttggttaattcttgagactttctgggttgtgagaggatgctcatagtgcactaactgttgacttgaatgacag

Basic information

species Oryza sativa
transcript LOC_Os10g40020.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g40020.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G464885_T01 (Zea mays), 5'ss of exon 3
TAATAATGCTGGAATCATGACAAGGAACTGCACACGCTCCATTGACGGCCTGGAATTGCAATTTGCAACAAATCACATCGgtacgagaaattacacag-----catttcttcatgcatct--caatcttattaacgga---ttagctgctt-----gagtgat-----ttggtta----attcttgaga-----------------ctttctgggttgtgaga--ggatgctcatagtgcactaactgttgacttgaatg-acag-------
 || ||||||||| | |||||||||| ||||||||| |||   |||||||||||| |||| || || ||||||||||| |||  |     ||| ||       || | |  |  || | |   || | ||||    ||    || || |||     | | ||      ||| |||    |||||  |||                   || ||   | |||||  |  | || ||| ||||||| |  || ||  | ||  | |        
CAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCTGGAACTGCATTTCGCGACAAATCACATTGgtgtgtcctcttataccagtacacactacagctagcctttgctaagcgtattgttcgaattctaactactttctttgtgcgacatctcttgtttacattattctgtagaagagtatcccttgctcgtcttatgacctatgagaatgattcctgataatgcactagcgattaaccgggatatatatatggcag

upper sequence: LOC_Os10g40020.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G464885_T02 (Zea mays), 5'ss of exon 2
--------------------TAATAATGCTGGAATCATGACAAGGAACTGCACACGCTCCATTGACGGCCTGGAATTGCAATTTGCAACAAATCACATCGgtacgagaaattacacag-----catttcttcatgcatct--caatcttattaacgga---ttagctgctt-----gagtgat-----ttggtta----attcttgaga-----------------ctttctgggttgtgaga--ggatgctcatagtgcactaactgttgacttgaatg-acag-------
                     || ||||||||| | |||||||||| ||||||||| |||   |||||||||||| |||| || || ||||||||||| |||  |     ||| ||       || | |  |  || | |   || | ||||    ||    || || |||     | | ||      ||| |||    |||||  |||                   || ||   | |||||  |  | || ||| ||||||| |  || ||  | ||  | |        
CTTGGTGTTCTTTTCGACAGCAACAATGCTGGAGTGATGACAAGGAGCTGCACACGTTCCTGCGACGGCCTGGAACTGCATTTCGCGACAAATCACATTGgtgtgtcctcttataccagtacacactacagctagcctttgctaagcgtattgttcgaattctaactactttctttgtgcgacatctcttgtttacattattctgtagaagagtatcccttgctcgtcttatgacctatgagaatgattcctgataatgcactagcgattaaccgggatatatatatggcag

upper sequence: LOC_Os10g40020.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G128577_T02 (Zea mays), 5'ss of exon 3
TAATAATGCTGGAATCATGACAAGGAACTGCACACGCTCCATTGACGGCCTGGAATTGCAATTTGCAACAAATCACATCGgtacgagaaatta-cacagcatttcttcatgcatctcaatcttattaacggattagctgcttgagtgatttggttaattcttgagacttt--ctgggttgtgagagga-------tgctcatagtgcactaactgttgacttgaatgacag---
 || || || ||| | |||||||||||||||||||| |||   ||||| |||||  |||| |||||||||||||||||||||  | |  |||| | ||  | || |||  | | | | || |  ||    |    ||  ||||  | || |   | | | | |  ||||    |  | |||  ||| |       ||||  || || |  | |  | ||||||||||   |   
CAACAACGCCGGAGTGATGACAAGGAACTGCACACGTTCCTGCGACGGTCTGGAGCTGCATTTTGCAACAAATCACATCGgtgtgtgtcattagcccaaaaattattc--gaaccgcgatttcgtt--ttgcagcgcgtcttgtttaatctacctcactttcggcacttgaattatgatgtatgagaacgattcctgctggtactgtagcagcattagacttgaatggtggcag