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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTGTTCAATCCTTGTCACTTTGTGCTCCAGgtaaggtgacatttcaggtttagcactagaaaaaacagtgagcttcgtacaacacaaattgacatgatacccctcctttggtttcag

Basic information

species Oryza sativa
transcript LOC_Os10g38980.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTGTTCAATCCTTGTCACTTTGTGCTCCAGgtaaggt--gacatttcaggtttagcactagaaaaaacagtgagcttcgtacaacacaaattgacatgataccc-ctcctttggtttcag-------------------------------------------------
|| ||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    | ||||  |  ||  |    | ||| || |     |    | | | | ||    ||||||| | | ||  |||                                                         
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTGTCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataa--caacatgattctcactatttttaacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag

upper sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTG---TTCAATCCTTGTCACTTTGTGCTCCAGgtaag-gt---gacatttcaggtttagcactagaaaaaacagtgagcttcgtacaacacaa-attgacatgatacccctcctt--tggtttcag--------------------------------
    |  | ||| |||| |||||||||||||||||||| |||||||| ||||| ||||| || |||||||||    ||  |||  ||||||| ||||| || |||| | ||   ||||  |  | |||  |   |               ||  | ||  |      |   ||||||   |    |  || || ||                                 
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaatttgctttctcttgatcgctgcttactttttttattcaggatgttggtattatgatattacaaaatactgtttgcatatgcttaactcttgtctctatttttttttcag

upper sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G01200.1 (Glycine max), 5'ss of exon 6
AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTG---TTCAATCCTTGTCACTTTGTGCTCCAGgtaaggtgacatttcaggtttagcactagaaaaaacagtgagcttcgtacaacacaaat-----tgacatgatacccc--tcctttggtttcag---------------------------------
    |  | ||| |||| |||||||||||||||||||| |||||||| || || ||||| || |||||||||    ||  |||  ||||||| ||||| || |||| |          | |||     ||    |   | |    |||  |  |   |  ||     |   ||||||   |  |    || || ||                                  
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCACCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaagttggtttctcttgatcgctgcttacttttttaattccggatgttggtattatgatagtacaatatactgtttgcatttgcttgacttgtctctatttttttttttgcag

upper sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 6
lower sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTGTTCAATCCTTGTCACTTTGTGCTCCAGgtaa------------------ggtgacatttcag-----gtttagcactagaaaaaacagtgagcttcgtacaacacaaattgacatgatacccctcctttggtttcag-------------
||  |  | |||   || ||||||||||||||||  ||||||||||| || ||||||||||| ||||| ||  |    || ||||| || |||||||| |||||                  | |  | | | |      |||      |  | |||||    |  ||   |   || |||  |   || |    ||  ||   ||| |              
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGgtaatcacttctctctctacctgttctcttcttactcattgttggagcttccagaaaactaaaaagtttaaattgcaaaaaaagttttgctttatcttattcaattttattttaaatatgcag