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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGGAGCTGGGTTGACTGGGACCAAAATGGCCAAAAGAATTGGTTGTGTGAGAGAATTTGAGTTCAACACTATCGGCGAGAACCATAACCAGGGTgtgagtttttgttctcttgtgttattttgattcgatgttggaaaggttcagagagcataaagcaaagatgttatccctagtcttcgataaaactttttcgagtggatgacacttaataggattgacatttcag

Basic information

species Oryza sativa
transcript LOC_Os10g36830.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36830.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G886799_T01 (Zea mays), 5'ss of exon 6
CTGCTGGAGCTGGGTTGACTGGGACCAAAATGGCCAAAAGAATTGGTTGTGTGAGAGAATTTGAGTTCAACACTATCGGCGAGAACCATAACCAGGGTgtgagtttttgttctctt---gtgt-tattttgattcg----atgttggaaaggttcaga-gagcataaagcaaagatgttatccctag------tcttcgataaaactttttcgagtggatgacacttaataggattgacatttcag------
||||||||||||||||||||||||| |||||||||| |||||||||    || | ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |    |||  | | ||| | |     || |  || |||  | | | ||| ||||||| | | || || | ||        |  ||   || ||| | ||   |||     ||| |    ||    | |         
CTGCTGGAGCTGGGTTGACTGGGACAAAAATGGCCACAAGAATTGGAAACGTAAAAGAATTTGAGTTCAAGACTATCGGCCAGAACCATAGCCAGGGTgtgagtttttgttctccttctatgtgcactgtgacttgcttggtgctcaaatggtctaaacgggcacaaagcaa-gctcttgtctccaggacaagcatatgagtgaaatttgttgatcagatattcgttactgttttttttctcttgctttcag