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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGGCGATACCGTTGGATACCAGATTCGCCTTGAATCGAAACGATCTGCACAAACCAGACTGCTATTCTGCACCACAGGAGTTCTACTTAGAAGATTGgtatgcctatggcttcactgttgtttatattcatgatttttgatttttactctttgcttcacactactttttttgggttgatgtgcttgaatttgaagag...

Basic information

species Oryza sativa
transcript LOC_Os10g33275.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g33275.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G399212_T01 (Zea mays), 5'ss of exon 8
GCTTGGCGATACCGTTGGATACCAGATTCGCCTTGAATCGAAACGATCTGCACAAACCAGACTGCTATTCTGCACCACAGGAGTTCTACTTAGAAGATTGgtatgcctatggcttcactgt-tgtttatat-tcatgatttttgatttttactctttgcttcacactactttttttgggttgatgtgcttgaatttgaagag
 || |||||  | |||||||||||||||||||||||||| ||||| |||||||||||  |  |||| |||||||| || |||||| | ||||||||| ||||||||||  |  |    ||  | || |||| |   ||| | |       | |  ||| |    |    ||    || |   | |  | ||  |||||    
ACTCGGCGAGGCTGTTGGATACCAGATTCGCCTTGAATCAAAACGGTCTGCACAAACACGGTTGCTGTTCTGCACTACTGGAGTTTTGCTTAGAAGACTGgtatgccttagaatattttgcatattcatatattgagatgtcttgaccacatttcttggtgagaagcctttccactgagccaaaggtcctgggtttgaca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678639|gb|CF306878.1|CF306878
EST:     CACAAACCAGACTGCTATTCTGCACCACAGGAGTTCTACTTAGAAGATTG                         GTTCAGGAGCCAGACTTAGTTGGTGTAAGCCATTTACTAGTTGATGAAATT
genomic: CACAAACCAGACTGCTATTCTGCACCACAGGAGTTCTACTTAGAAGATTGgtatgcctat ... atgaatacagGTTCAGGAGCCAGACTTAGTTGGTGTAAGCCATTTACTAGTTGATGAAATT