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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAGAAGATCAATGTGAGCTGGTATTTTTACACTCATGAAAGTAGGTTGATTCTTCTTGCTTCAGGAATGCAATGCACACTATTTACTGGATATCAGgtaatggcacccattctagacaacctgcccctataaaggaataaatttttattttttataaccagagcagaaagccctagctccatattctcattgaaca...

Basic information

species Oryza sativa
transcript LOC_Os10g26140.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G444692_T02 (Zea mays), 5'ss of exon 5
CTCAAAGAAGATCAATGTGAGCTGGTATTTTTACACTCATGAAAGTAGGTTGATTCTTCTTGCTTCAGGAATGCAATGCACACTATTTACTGGATATCAGgtaatggcacccattctagacaac----ctgcccctataaaggaataaatttttattttttataaccagagcagaaagccctagctccatattctcattgaaca
 || |||||| ||||||||||||||||| ||||||| |||||||||||| ||||||| |||||||| ||||||||||||||  | |||||||| |||||||||||| |||  | |  ||||||      ||   ||  ||   || | ||  || ||  |  | |  | |    |||  |  ||   || || ||   |||   
ATCGAAGAAGTTCAATGTGAGCTGGTATCTTTACACACATGAAAGTAGGCTGATTCTACTTGCTTCTGGAATGCAATGCACGATGTTTACTGGCTATCAGgtaatgtcacgtacttgagacaaaatcattgaaactccaagtaaagacatcatttttcctcttcaagacatgccaaaatctcagt--cacatgcttgctgat--

upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA19G33240.1 (Glycine max), 5'ss of exon 3
CTCAAAGAAGATCAATGTGAGCTGGTATTTTTACACTCATGAAAGTAGGTTGATTCTTCTTGCTTCAGGAATGCAATGCACACTATTTACTGGATATCAGgtaatggcacccattctagacaacctgcccctataaaggaataaatttttattttttataaccagagcagaaagccctagctccatattctcattgaaca----
  |||||||  | |||||||| |||||| ||||||| ||||||||| |  || ||||||||||||| || ||||| ||||    ||| | ||||| |||||| |  |     ||      |  | |   | | |||     || ||    |   | | || |  ||  || | |   |   | || | |   |||  | |    
AACAAAGAAACTGAATGTGAGTTGGTATGTTTACACCCATGAAAGTCGCCTGGTTCTTCTTGCTTCTGGCATGCAGTGCAAGACATTCAATGGATTTCAGgtga--gtgtgtatggcttgcttctttttcttgtaatttt-tagatcaagaagatatttaccttgaagagta-gtaatgtgttcaaaatacgatttgatatcat

upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA03G30320.1 (Glycine max), 5'ss of exon 7
CTCAAAGAAGATCAATGTGAGCTGGTATTTTTACACTCATGAAAGTAGGTTGATTCTTCTTGCTTCAGGAATGCAATGCACACTATTTACTGGATATCAGgtaatggcacccattctagacaacctgcccctataaaggaataaatttttattttttataaccagagcagaaagccctagctccatattctcattgaaca----
  |||||||  | |||||||| |||||| ||||||| ||||||||| |  || ||||||||||||| || ||||| ||||    |||   ||||| |||||| |  |     ||      |  | |   | | |||     || ||    |   | | || ||   |   | ||   |   |  || ||   |   || |    
AACAAAGAAACTGAATGTGAGTTGGTATGTTTACACCCATGAAAGTCGCCTGGTTCTTCTTGCTTCTGGCATGCAGTGCAAGACATTCCATGGATTTCAGgtca--gtgtgtatggcttgcttctttttcttgtaatttt-tagatcaagaaggtattta-ccttggagaatagtaatttatgtatgtttcaaaacaagatttg

upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv08s0007g06830.t01 (Vitis vinifera), 5'ss of exon 3
CTCAAAGAAGATCAATGTGAGCTGGTATTTTTACACTCATGAAAGTAGGTTGATTCTTCTTGCTTCAGGAATGCAATGCACACTATTTACTGGATATCAGgtaatggcacccattctagacaacctgcccctataaaggaataaatttttattttttataaccagagcagaaagccctagctccatattc-tcattgaaca----
  ||||||| || ||||||||||||||| | ||||| ||||||||  | |||||||||||||||||||||||||| ||||     || || |||| |||||||      |   || ||       ||   ||| ||     |  | |    |||| | ||  |   |     |  | |   |  | |||  |  |  ||      
GACAAAGAAAATGAATGTGAGCTGGTATGTCTACACACATGAAAGCCGCTTGATTCTTCTTGCTTCAGGAATGCAGTGCAAGAGTTTCACAGGATTTCAGgtatatatgctagtttta-----tttgtagctaaaacttgtttgaatccctttttatctatgctttgtttggaatcttcaataaaaattggttttccaatgctca