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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCCAAAAGGACTGCTGAATTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGACGTAAGGCCTGAAAAATGGGGATTGCGGCCATTTAGTGATTgtatgttctaactcttgggactacttctgttagaaaattacaggcatctttatcttatctattgacatattttatatgcag

Basic information

species Oryza sativa
transcript LOC_Os10g14814.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g14814.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 8
GTCCCCAAAAGGACTGCTGAATTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGACGTAAGGCCTGAAAAATGGGGATTGCGGCCATTTAGTGATTgtatgttctaactcttgggact------acttctgtt----------agaaaattacaggcatctttatcttatctattgacatattttatatgcag
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ATACCCAAAAAGACTGCTGAGTTCAGTTCTGCTGATGAGGTGATCAATTCCCTCCTTGATGTGAGGCCTGAAAAGTGGGGGTTGCCACCATTTAATGATTgtatgttcaaagtcttgagcttctctatacttttgttcattgagaagagaacattatgtgggttttaagcttatctgtcgataaatgtgctgtgcag