1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACTGAAATTGTCAAAGCTGATCTTGCCTCCAAGACTTTGACTAGTGCAGTTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtgaactgtgaaatttgtttaatatcggctcattgctgtcattactatcacttgttatttacatgctctttttttatccgcttgtcag
species | Oryza sativa |
transcript | LOC_Os09g39380.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATTEST: gi|88407635|gb|CI607769.1|CI607769
genomic: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
EST: TGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATTEST: gi|33381850|gb|CF197193.1|CF197193
genomic: TGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
EST: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATTEST: gi|58680354|gb|CK069041.1|CK069041
genomic: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
EST: TGGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATTEST: gi|33802788|gb|CF327265.1|CF327265
genomic: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
EST: TTGGAGCAACCTTTACATACGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATTEST: gi|11565247|gb|AU165883.1|AU165883
genomic: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
EST: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATTEST: gi|58686216|gb|CK074903.1|CK074903
genomic: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
EST: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATTEST: gi|58685635|gb|CK074322.1|CK074322
genomic: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
EST: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCA GTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
genomic: TTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtg ... cgcttgtcagGTCATCAAGCTATCAGATTTTGGTACTCAAGGAGCTGATTCCAACAACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGAAATTGTCAAAGCTGATCTTGCCTCCAAGACTTTGACTAGTGCAGTTGGAGCAACCTTTACATATGAGATTTTGATCATTGCAACTGGCTCCTCAgtatgttgtgaactgtgaaatttgtttaatatcggctcattgctgtcattactatcacttgttatttacatgctctttttttatccgcttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC