1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGTGACCCTCATGCTAACAAGCTTGTAACAAGTTCTGACTCTCCTCAGGAGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAGgtactagttttgcatgttttgtttggattctgtttcccccttcatgtgatagttgcctattctcttaatgttaaatttattgcaatgatttccattgaatctttttccctcattgcag
species | Oryza sativa |
transcript | LOC_Os09g38530.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCGCTTTGAG GAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACTEST: gi|29646687|gb|CB651694.1|CB651694
genomic: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAGgtactagttt ... ctcattgcagGAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACT
EST: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAG GAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACTEST: gi|29630499|gb|CB635508.1|CB635508
genomic: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAGgtactagttt ... ctcattgcagGAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACT
EST: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCGCTTTGAG GAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACTEST: gi|29627339|gb|CB632350.1|CB632350
genomic: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAGgtactagttt ... ctcattgcagGAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACT
EST: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCGCTTTGAG GAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACT
genomic: AGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAGgtactagttt ... ctcattgcagGAGAGTGACATCAAGTGGGCTTCCCGTTGGGACACCTATCTGTTGATGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGACCCTCATGCTAACAAGCTTGTAACAAGTTCTGACTCTCCTCAGGAGGTCGAAGCTGGCAAAGAAATCATATTCACCTATGATGTTCACTTTGAGgtactagttttgcatgttttgtttggattctgtttcccccttcatgtgatagttgcctattctcttaatgttaaatttattgcaatgatttccattgaatctttttccctcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA