Skip to another splice site:
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctccctccaatccgcaacaccgtgtctccattaactcataaatcttcttgtgtgacctcactgactgttttgtgtttgtgtatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os09g37910.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G066528_T02 (Zea mays), 5'ss of exon 7
GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctccctccaatccgcaacacc----gtgtctccat-taactcataaatcttcttgtgtgacctcactgactgttttgtgtttgtgtatgtgcag------------
 | |||| |||  |  | || || || || |||||||||||||||||||||||||||||||||||||   | | |  | | | ||  | |||            |||  | ||  |   | |  | | ||  | ||||    ||   ||    |||   | ||  || || |             
TCTGGAGACCCCACGGCGTCTGGTGATTCCGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGA-Ggtgaacaaaccctcttgagtccttgctcttatttgtgctttcacctggtttagtagttttgctttgtggatccaacaacctcattggactcgttcatttgaaattggttttgcag

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G162284_T02 (Zea mays), 5'ss of exon 7
---GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctccctccaatccgcaacaccgtgtctccattaactc-ataaatcttcttgtgtgacctcactgactgttttgtgtttgtgtatgtgcag------------
   | |||||| ||  |    || || || ||||||||||||||||||||||| ||||||| ||||||||    |  |||    ||||||  | | |  | |||  |||   ||  | |      | ||  | ||||   || |  ||  |  ||     ||  || || |             
TCTGGAGGAGGACCCACATTGTCTGGTGATTCTGACAAGTCCAAGTCCGAGGTCAACGACGGGGACGAGGAGgtca-aagcaaaccctcctgtgccctgccccgactcttgttttccactgctggttttactttgtgga-tcccaaaccttactggtcccgtccatttgaaattggttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33663559|gb|CF294526.1|CF294526
EST:     GCGACTTTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33664242|gb|CF295209.1|CF295209
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|55434605|gb|CV730425.1|CV730425
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33684508|gb|CF312747.1|CF312747
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86256064|gb|CI007780.1|CI007780
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88319698|gb|CI520741.1|CI520741
EST:     GAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33677032|gb|CF305271.1|CF305271
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86528526|gb|CI168732.1|CI168732
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88454775|gb|CI511747.1|CI511747
EST:     ACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: ACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88564774|gb|CI495491.1|CI495491
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86432557|gb|CI086168.1|CI086168
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33677015|gb|CF305254.1|CF305254
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|55436884|gb|CV731619.1|CV731619
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88845938|gb|CI084668.1|CI084668
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|55435979|gb|CV731127.1|CV731127
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|89176361|gb|CI043382.1|CI043382
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86860548|gb|CI323463.1|CI323463
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GTTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|66947180|gb|AU312024.1|AU312024
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88237036|gb|CI236885.1|CI236885
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88214302|gb|CI214151.1|CI214151
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86527793|gb|CI167999.1|CI167999
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33664894|gb|CF295861.1|CF295861
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33655503|gb|CF278117.1|CF278117
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33691039|gb|CF319278.1|CF319278
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88594703|gb|CI714661.1|CI714661
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86525046|gb|CI165252.1|CI165252
EST:     ACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: ACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86254444|gb|CI059171.1|CI059171
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86522216|gb|CI162422.1|CI162422
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|109712974|gb|CI105582.1|CI105582
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88217879|gb|CI217728.1|CI217728
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|13896451|gb|AU182787.1|AU182787
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33655324|gb|CF277938.1|CF277938
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88560960|gb|CI491666.1|CI491666
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|94362993|gb|CI053154.1|CI053154
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|89180836|gb|CI009744.1|CI009744
EST:     GCGACTCTGACAAGTCCCAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|163926642|gb|EG713658.1|EG713658
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33653913|gb|CF276527.1|CF276527
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88296671|gb|CI537638.1|CI537638
EST:     TGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCA-C                         CGTGACNGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAG
genomic: TGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGAC-GAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAG
EST: gi|88986566|gb|CI033709.1|CI033709
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88962196|gb|CI097349.1|CI097349
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88204316|gb|CI204165.1|CI204165
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCATC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33657650|gb|CF280264.1|CF280264
EST:     CGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGANGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: CGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGA-GGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86488849|gb|CI131482.1|CI131482
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88528761|gb|CI457025.1|CI457025
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86507378|gb|CI150011.1|CI150011
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33659198|gb|CF281811.1|CF281811
EST:     CGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGANGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: CGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGA-GGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88561176|gb|CI491893.1|CI491893
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|89171274|gb|CI040551.1|CI040551
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88216560|gb|CI214660.1|CI214660
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86253064|gb|CI057989.1|CI057989
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88221117|gb|CI221073.1|CI221073
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86415474|gb|CI029485.1|CI029485
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88964072|gb|CI032989.1|CI032989
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88979426|gb|CI025928.1|CI025928
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88511789|gb|CI439295.1|CI439295
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33657164|gb|CF279778.1|CF279778
EST:     GCGACTTTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|13896450|gb|AU182786.1|AU182786
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86524796|gb|CI165002.1|CI165002
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|55434296|gb|CV730269.1|CV730269
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88986637|gb|CI033780.1|CI033780
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86517396|gb|CI157602.1|CI157602
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|55439163|gb|CV732883.1|CV732883
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88205754|gb|CI205603.1|CI205603
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33659824|gb|CF282437.1|CF282437
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33680144|gb|CF308383.1|CF308383
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|163929528|gb|EG713471.1|EG713471
EST:     GAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88979044|gb|CI025558.1|CI025558
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|89170387|gb|CI039664.1|CI039664
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33656519|gb|CF279133.1|CF279133
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|32947912|gb|BP184484.1|BP184484
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|33656171|gb|CF278785.1|CF278785
EST:     GACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|163928572|gb|EG711157.1|EG711157
EST:     TGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: TGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|88987435|gb|CI034380.1|CI034380
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|163928205|gb|EG712533.1|EG712533
EST:     TCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: TCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86419590|gb|CI054391.1|CI054391
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
EST: gi|86488236|gb|CI130869.1|CI130869
EST:     GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC                         GGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT
genomic: GCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 74 (downstream exon)
Score: 137

GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGCgtaagacctc ... gtatgtgcagGGTGACGAGTGATCGATGGAGGGCTGCAGGTAGTAGGGAAAGTTCTCGAGTCGGCCTAACCAAAGTGGACGTTGCTGGTTGCTGCTCCTTGCTAGTGTTC




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