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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTATCGATGAAGCTTGCGACAGTAAACCCAAGGCTTGACCTCAACATAGAAGGGCTTCTTTCAAAAGACgtatgccagcaagttgcaacctcactttacttccactacttttccttctaggaagctaacaatgtccatttttttctcctcaactacag

Basic information

species Oryza sativa
transcript LOC_Os09g29830.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g29830.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 4
TTCTTATCGATGAAGCTTGCGACAGTAAACCCAAGGCTTGACCTCAACATAGAAGGGCTTCTTTCAAAAGACgtatg------ccagcaagt---tgcaacctcactttacttccactacttttccttctaggaagctaacaatgtccatttttttctcctcaactacag
|||||||| |||||||| || || |||||||||||||| ||||||||||||||||||||||| || ||||| |||||      || ||||     | |   ||| || |   |||| |  || | | | || ||| ||||||| | |||| | ||  |   || |     
TTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGATgtatgatgcttcctgcaatcccattctctctctctctctctccatttgttatacatgtaagaatctaacaaag-ccatatattctttaccatcag---

upper sequence: LOC_Os09g29830.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G137541_T01 (Zea mays), 5'ss of exon 5
TTCTTATCGATGAAGCTTGCGACAGTAAACCCAAGGCTTGACCTCAACATAGAAGGGCTTCTTTCAAAAGACgtatgccagcaagttgcaacctcactttacttccactacttttccttctaggaagctaacaatgtccatttttttctcctcaactacag-
||||| || |||||||| || || || ||||||||||||||||||||||||||||||||||| || ||||||||| |   ||     || | |||      | ||||    |   |  ||||  ||  |||    || | |    |  |     |||||   
TTCTTGTCAATGAAGCTCGCCACGGTGAACCCAAGGCTTGACCTCAACATAGAAGGGCTTCTATCGAAAGACgtacgtacgc-----gcgatctcgt----cctccatcg-tccccaatctaacaaa-taaaggcgttcttacaatcttatcttactaccag