1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACGTGATTATATTCATGTAGTTGATCTTGCTGAGGGGCATATTGCTGCACTACGGAAGCTGTTTGAAAGCTCAATAGgtttgcacaatttactgctctctcaactcaaatttttatgggcaaattcttgcatgcaccccttgctatgtgtgtgcaatggttccccaaaacgagtctc...
species | Oryza sativa |
transcript | LOC_Os09g15420.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTGAGGGGCATATTGCTGCACTACGGAAGCTGTTTGAAAGCTCAATAG GATGTCAAGCATACAACCTTGGAACAGGAAAGGGAACATCAGTGTCGGAAAEST: gi|86505663|gb|CI148296.1|CI148296
genomic: TGCTGAGGGGCATATTGCTGCACTACGGAAGCTGTTTGAAAGCTCAATAGgtttgcacaa ... ctacttgcagGATGTCAAGCATACAACCTTGGAACAGGAAAGGGAACATCAGTGTTGGAAA
EST: TGAAAGCTCAATAG GATGTCAAGCATACAACCTTGGAACAGGAAAGGGAACATCAGTGTTGGAAA
genomic: TGAAAGCTCAATAGgtttgcacaa ... ctacttgcagGATGTCAAGCATACAACCTTGGAACAGGAAAGGGAACATCAGTGTTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGTGATTATATTCATGTAGTTGATCTTGCTGAGGGGCATATTGCTGCACTACGGAAGCTGTTTGAAAGCTCAATAGgtttgcacaatttactgctctctcaactcaaatttttatgggcaaattcttgcatgcaccccttgctatgtgtgtgcaatggttccccaaaacgagtctc
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacccc