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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCGCTTTGGATGGTTACTTTTCTTGGTGTTAAGAATCCAAACATTCAGCCGATTTAAGGATCTTGTTACATCCACAAATGGACTAGTTTCTGTGTTGgtaaggatttctaccatgatcttttttcatgcaacaaggtaatcgatgcattatgttaataaaaatgtaaccaatgaatgctgtttattccatacgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os08g42600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G016997_T01 (Zea mays), 5'ss of exon 6
TTATCGCTTTGGATGGTTACTTTTCTTGGTGTTAAGAATCCAAACATTCAGCCGATTTAAGGATCTTGTTACATCCACAAATGGACTAGTTTCTGTGTTGgtaaggatttctaccatgatctt---------------ttttcatgcaacaaggtaatcgatgcattatgttaataaaaatgtaaccaatgaatgctgtttattccatacgcatgcag
|||||||||||||||||| || || || ||  |||||||||||||||||||| |||| ||||||||||| ||||| || |||| ||||||||||||||||||||| |  ||| | ||||||||               |||   |||| ||||  ||| |||| ||  ||||| | ||  || ||  |||| || ||| |||||    | || |||||
TTATCGCTTTGGATGGTTGCTCTTTTTAGTCCTAAGAATCCAAACATTCAGCAGATTCAAGGATCTTGTGACATCTACGAATGAACTAGTTTCTGTGTTGgtaagaacgtctgctatgatcttcgcaagtgttttctctttgtttgcagcaagacaattgatgtatactgttagttaacttgaaagtaatggatactgcttattttgcatgcctgcag

upper sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G033828_T03 (Zea mays), 5'ss of exon 7
TTATCGCTTTGGATGGTTACTTTTCTTGGTGTTAAGAATCCAAACATTCAGCCGATTTAAGGATCTTGTTACATCCACAAATGGACTAGTTTCTGTGTTGgtaaggatttctaccatgatctt-------------ttttca--tgcaacaaggtaatcgatgcattatgttaataaaaatgtaaccaatgaatgctgtttattccatacgcatgcag
|||||||||||||||||| || || || ||  |||||||||||||||||||| |||| ||||||||||| |||||||| || | ||| |||||||||||||||||||  ||| | ||||||||             | ||||  |||| || | |||| |||| || |||||| | ||  || ||  |||| || ||| |||||    || |||||||
TTATCGCTTTGGATGGTTGCTCTTTTTAGTCCTAAGAATCCAAACATTCAGCAGATTCAAGGATCTTGTGACATCCACGAACGAACTGGTTTCTGTGTTGgtaaggacatctgctatgatcttcacaagtgctttctcttcacttgcagcaggataattgatgtataatgttagttaacttgaaagtaatggatactgcttattttgcacacatgcag