1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAACCAATCAAGCCCAGCTCCATCTCAAGCTATCATGGACACAACCTCAACCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGgttggcacatgtccacctttctttggctaaatcatacatgaaaatgtcccaatttagctacatatatcatggcatcaaagtaaaaaaaatccaacaattttacccacctgaggtcatcactgaatgtgtgcatcccctttcag
species | Oryza sativa |
transcript | LOC_Os08g42470.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAG GACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAGEST: gi|58669636|gb|CK058322.1|CK058322
genomic: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGgttggcacat ... cccctttcagGACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAG
EST: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAG GACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAGEST: gi|88219040|gb|CI220600.1|CI220600
genomic: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGgttggcacat ... cccctttcagGACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAG
EST: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAG GACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAGEST: gi|15852981|gb|BI805777.1|BI805777
genomic: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGgttggcacat ... cccctttcagGACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAG
EST: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAG GACAATGCCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAGEST: gi|88972976|gb|CI019595.1|CI019595
genomic: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGgttggcacat ... cccctttcagGACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAG
EST: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAG GACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAG
genomic: CCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGgttggcacat ... cccctttcagGACAATGGCAGTTACCTGATGCAAGCAGTGGGGGAGCCAAGGCAGCAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCAATCAAGCCCAGCTCCATCTCAAGCTATCATGGACACAACCTCAACCACATCCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTTCTCTCAGgttggcacatgtccacctttctttggctaaatcatacatgaaaatgtcccaatttagctacatatatcatggcatcaaagtaaaaaaaatccaacaattttacccacctgaggtcatcactgaatgtgtgcatcccctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA