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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgtttctttcatcccattatagtctcagttgttttcgtgaattaggtagtttgtgggaagtaatgctttggatttatatagactattcaagctgt...

Basic information

species Oryza sativa
transcript LOC_Os08g41810.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G702426_T01 (Zea mays), 5'ss of exon 6
CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgtttctttcat-------cccattatagtctcagttgttttcgtgaattagg-tagtttgtgggaagtaatg--ctttggatttatatagactattcaagctgt--------------------------------------------------------
||||||||||||| || |||||| | ||||| ||  ||||||||||||||||| | ||||||||||||||||||       ||||       || | || |   |   |   | || || |||    || |||  | |  ||| ||  |||  | |  | |   |   ||| |  |                                                          
CTTACATGTCCTCCCCTTGCCACATTGAGCTGATTCTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGgtatttaacatgctcataaaaatgccaactagatattttctgagtatcttgcattgatctaatttcagagctgtattgttcttctggtacagaagtatccttccattttatgttctttccatttgaatagtatctgtctgtaatatatgtcatctttattttgtag

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G148744_T01 (Zea mays), 5'ss of exon 6
CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatt-----tgtttctttcatcccat---tatagtctcagttgttttcgtgaattagg-tagtttgtggga-agtaatgctttggatttatatagactattcaagctgt
| |||||||||||||| |||||| | ||||| ||||||||||||||||||||| | |||||||||||||||||     ||||  |   || ||||   |||| | |   |     || || ||| |  || |||  | |  | |  ||  || | ||  ||| |   |          
CCTACATGTCCTCACCTTGCCACATTGAGCTGATCTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGgtattacacatgttcatcaaatgccatctatatattttttctgagcatcttgcattggtctaatttcagagctatttttggcttaggttcttatggtaca----------

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 6
CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgtttctttcatcccattatagtctcagttgttttcgtgaattaggtagtttgtgggaagtaatgctttggatttatatagactattcaagctgt
|||||||||| || || |||||| | ||||| || ||||| |||||||||||| | ||||||||||||||| |  ||     |||| |  | |      |   || |   |   |    |  | | | | |   ||| |||   || |||      | ||  ||    
CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattga--ccatctctctgt-----taacagtatatatacttcctcttttcttttgcatcaaattctt---atctattattgttcttgtag----

upper sequence: LOC_Os08g41810.1 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S38_376V6.1 (Physcomitrella patens), 5'ss of exon 6
CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgta--tttgtttctttcatcccattata---gtctcagttgttttcgtgaattaggt----agtttgt---------gggaagtaatgctttggatttatatagactattcaagctgt------------------------------
||||||||||||| || |||||| | ||||| ||| | || |||||||||| | | |||||||||||||||  |||   |  |  ||   ||   |   || | || |  |||| ||   |   |    | |||||         |  || | |   |||  | |||| || | | |   | ||||                              
CTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAGgtaattttagatgctaaattagatggcaaaagttttagatagtttcctgtcctgtttttcgattttgtttcgtgactgtaaattcacaatttacagttatttataat-tcagaactgtaaattaaccggttctttacgggctttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88288852|gb|CI517983.1|CI517983
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88483888|gb|CI421159.1|CI421159
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88489400|gb|CI426672.1|CI426672
EST:     CCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: CCACGTCGAGCTTATCTTGTCAGAGAAGGAAGA-GGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88486185|gb|CI423456.1|CI423456
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88237554|gb|CI237403.1|CI237403
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88279621|gb|CI400621.1|CI400621
EST:     GCCACGTCGAGCTTATCTTTTCAGAGAAGGAAGAGNCCGTNAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88972978|gb|CI019597.1|CI019597
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88505088|gb|CI432594.1|CI432594
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88469886|gb|CI407157.1|CI407157
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88547664|gb|CI477976.1|CI477976
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|38478888|gb|CF963021.1|CF963021
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88480986|gb|CI418257.1|CI418257
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88281357|gb|CI402753.1|CI402753
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88320361|gb|CI523104.1|CI523104
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88322586|gb|CI542914.1|CI542914
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88296945|gb|CI542657.1|CI542657
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|86873025|gb|CI327022.1|CI327022
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|33670175|gb|CF298414.1|CF298414
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88437723|gb|CI533680.1|CI533680
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88286481|gb|CI524980.1|CI524980
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88237760|gb|CI237609.1|CI237609
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88906347|gb|CI375419.1|CI375419
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88464275|gb|CI532210.1|CI532210
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88515252|gb|CI442906.1|CI442906
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88461194|gb|CI547374.1|CI547374
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|86836934|gb|CI347501.1|CI347501
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCCCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88558425|gb|CI488909.1|CI488909
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88282646|gb|CI404042.1|CI404042
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88486495|gb|CI423766.1|CI423766
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|425862|gb|D22540.1|D22540
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88490224|gb|CI427496.1|CI427496
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88517129|gb|CI444611.1|CI444611
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88450754|gb|CI549840.1|CI549840
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88489112|gb|CI426384.1|CI426384
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88998114|gb|CI037999.1|CI037999
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88906020|gb|CI089606.1|CI089606
EST:     GGCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|44673470|gb|CR286904.1|CR286904
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88470304|gb|CI407575.1|CI407575
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|86425044|gb|CI070141.1|CI070141
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88522050|gb|CI449783.1|CI449783
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88517291|gb|CI444945.1|CI444945
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|10930732|gb|AU161006.1|AU161006
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCC-AGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88506548|gb|CI434054.1|CI434054
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|27548383|gb|CA766455.2|CA766455
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88440338|gb|CI549219.1|CI549219
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88374960|gb|CI521026.1|CI521026
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|86413432|gb|CI067837.1|CI067837
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88837859|gb|CI371437.1|CI371437
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88519649|gb|CI447303.1|CI447303
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88283408|gb|CI404854.1|CI404854
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88508928|gb|CI436434.1|CI436434
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|86414312|gb|CI068715.1|CI068715
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|55410152|gb|CV722528.1|CV722528
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88506832|gb|CI434338.1|CI434338
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88508906|gb|CI436412.1|CI436412
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88283395|gb|CI404841.1|CI404841
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88556916|gb|CI487280.1|CI487280
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88667474|gb|CI722213.1|CI722213
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88322363|gb|CI540331.1|CI540331
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|11173119|gb|AU164622.1|AU164622
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88455152|gb|CI516790.1|CI516790
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|15852189|gb|BI804985.1|BI804985
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|426702|gb|D22772.1|D22772
EST:     GCCACGTCGAGCTTATCTTGTCANAGAAGGAANAGGCCGTGAANAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88554208|gb|CI484374.1|CI484374
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88520620|gb|CI448274.1|CI448274
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|29687038|gb|CB683313.1|CB683313
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|58604680|gb|CK015208.1|CK015208
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88520147|gb|CI447801.1|CI447801
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88440435|gb|CI549316.1|CI549316
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88380120|gb|CI516107.1|CI516107
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88381115|gb|CI525885.1|CI525885
EST:     GCCACNTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88851310|gb|CI404362.1|CI404362
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88516539|gb|CI444193.1|CI444193
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88510798|gb|CI438304.1|CI438304
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88415844|gb|CI535924.1|CI535924
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
EST: gi|88380692|gb|CI521261.1|CI521261
EST:     GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAG                         CCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC
genomic: GCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 37 (upstream exon), 64 (downstream exon)
Score: 55

CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgttt ... tcttttgtagCCTGAAACCACCATCGCCCCGAGGAGGCAGTGAGCTTATCCGCCCAGAGTCGCAACTTTAGTTCATTTTCTAGTACTTTGTTATGGCATTGTGTGCTATT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTACATGTCCTCACCCTGCCACGTCGAGCTTATCTTGTCAGAGAAGGAAGAGGCCGTGAAGAAAGAGgtatttgtttctttcatcccattatagtctcagttgttttcgtgaattaggtagtttgtgggaagtaatgctttggatttatatagactattcaagctgt

- - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA