Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAGTCACAGAAATAGGTGATGATAAGAAAATCTTGAAGAAAGTTCTGACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaagcgtgatgcttactgatcttactattttctttcctatatgtcagatagaggtcaacagtgtctgattactacctgtaatgacaaagttgcatttactgtttgacag

Basic information

species Oryza sativa
transcript LOC_Os08g41390.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41390.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G096585_T05 (Zea mays), 5'ss of exon 6
AAAACAGTCACAGAAATAGGTGATGATAAGAAAATCTTGAAGAAAGTTCTGACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaagcg-tgatgcttactgatcttact-attttctttcctatatgtcagatagaggtcaacagtgtctgattactacctgtaatgacaaagttgcatttactgtttgacag
|| || ||||||||||| || ||||||||||||||| | ||||| ||||| | |||||| ||| |||||||| ||||| || ||||| |||||| ||||||||| ||| | | | | | || || | || | | || | || | | || | | | || | | || || || ||||||||| | |||
AAGACTGTCACAGAAATTGGGGATGATAAGAAAATCCTTAAGAAGGTTCTCAAGGAGGGAGAAGGTTATGAGCGTCCCAACGAGGGTGCTGTTGTTGAAGgtatgctcaagtggtcaaagtacttaattgtaatgatgctagtagctgttggttcttgactcctttcagttgattaggtttatcttgcactcactaaattatgtttactgtt-ggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|454468|gb|D28191.1|D28191
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAANGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|58677816|gb|CK066503.1|CK066503
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|58695757|gb|CK084444.1|CK084444
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|58695816|gb|CK084503.1|CK084503
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|29630489|gb|CB635498.1|CB635498
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|58686617|gb|CK075304.1|CK075304
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|58682283|gb|CK070970.1|CK070970
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|2427305|gb|C71768.1|C71768
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTNTTAAAG                         TCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC
EST: gi|29628610|gb|CB633621.1|CB633621
EST:     GACGGAGGGTACAGGGTATGAGCGGCCCAATGAATGTGCAGTTGTTGAAG                         TCAAAATAACTGGAAAACTTCAAGATGGTACAATATTTACAAAGAACGGGC
genomic: GACGGAGGGTACAGGGTATGAGCGGCCCAATGAAGGTGCAGTTGTTAAAGgtatgccaaa ... tgtttgacagTCAAAATAACTGGAAAACTTCAGGATGGTACAATATTTACAAAGAAGGGGC