1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGgtatatattttcaaatgaattttgactgttcattgattttgttgtccattggtttatttttcttatgaactttattttag
species | Oryza sativa |
transcript | LOC_Os08g41010.7 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAG GAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTEST: gi|88677245|gb|CI729903.1|CI729903
genomic: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGgtatatattt ... tttattttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACT
EST: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAG GAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTEST: gi|58673635|gb|CK062321.1|CK062321
genomic: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGgtatatattt ... tttattttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACT
EST: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAG GAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTEST: gi|88904764|gb|CI712063.1|CI712063
genomic: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGgtatatattt ... tttattttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACT
EST: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAG GAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTEST: gi|3763615|gb|AU030367.1|AU030367
genomic: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGgtatatattt ... tttattttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACT
EST: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAG GAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACT
genomic: CGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGgtatatattt ... tttattttagGAGCTGGGCGTGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCGAGGGCTGGTTCATATTCCGAGGAAGGATCCCAGAAGAAGCCTGCAGgtatatattttcaaatgaattttgactgttcattgattttgttgtccattggtttatttttcttatgaactttattttag
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - CTGCAG