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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATAGTTGTGCTTGCAGAAAGTTTTGGCCATTCTGTTTTTAAAGAGTCACTCCAACGCATTTTTCAGTCCAGCGACAATGATCTTGGCTTATCATTCAAgtaaatatatcttagcccacttggttcagctggattttaacctgctcacatttccatgtttagtttgccttctatctactgcaaaattagaaaataaaaa...

Basic information

species Oryza sativa
transcript LOC_Os08g36994.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 4
GAATAGTTGTGCTTGCAGAAAGTTTTGGCCATTCTGTTTTTAAAGAGTCACTCCAACGCATTTTTCAGTCCAGCGACAATGATCTTGGCTTATCATTCAAgtaaatatatctta-gccca---cttggttcagctggattttaacctgctcacatttccatgtttagtttgccttctatctactgcaaaattagaaaataaaaa
|||| ||||||||||| ||||||||||||||| | |||||||  || || ||  |||   |||||||||| |  ||  ||||||||||  |||||| ||||| | | | ||||   | ||   ||   ||||  | | | ||       | |||| |   |  |   ||||  |   ||||        ||   |   |  || 
GAATTGTTGTGCTTGCTGAAAGTTTTGGCCATGCAGTTTTTAGGGACTCTCTTAAACATGTTTTTCAGTCAACTGATTATGATCTTGGTCTATCATCCAAgttagtctttcttgtactcatgtctgcattcaagttg-tgttggttaaatgacatattagtaat--atttgtttagaatcttgaaatttatgtcatggtttaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622673|gb|CB627684.1|CB627684
EST:     CTCCAACGCATTTTTCAGTCCAGCGACAATGATCTTGGCTTATCATTCAA                         TGGTATATTTGAAATTAACTGCTCAAAGGATGTCAAAATTCAAGGCATTAT
genomic: CTCCAACGCATTTTTCAGTCCAGCGACAATGATCTTGGCTTATCATTCAAgtaaatatat ... tactttgcagTGGTATATTTGAAATTAACTGCTCAAAGGATGTCAAAATTCAAGGCATTAT
EST: gi|396941631|gb|HO188288.1|HO188288
EST:     CTCCAACGCATTTTTCAGTCCAGCGACAATGATCTTGGCTTATCATTCAA                         TGGTATATTTGAAATTAACTGCTCAAAGGATGTCAAAATTCAAGGCATTAT
genomic: CTCCAACGCATTTTTCAGTCCAGCGACAATGATCTTGGCTTATCATTCAAgtaaatatat ... tactttgcagTGGTATATTTGAAATTAACTGCTCAAAGGATGTCAAAATTCAAGGCATTAT