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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAGgtttatttcccctttctccctcctcctggttggccatttgggtgtctttcaaagtgtatttggtatgtgtagggaagacgagaattccaaaggcaacctt...

Basic information

species Oryza sativa
transcript LOC_Os08g33850.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33850.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G152457_T03 (Zea mays), 5'ss of exon 6
AGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAGgtttatttcccctttctccctcctcctggttggccatttgggtgtctttcaaagtgtatttggtatgtgtagggaagacgagaattccaaagg--caacctt------------------------------------------------------------------------
||| |||||  || |||||||||||  | ||||||||||||||||||||  | || ||||||||||| || ||||| || || ||||||||||| |||||  | |||   ||||||   | |   ||     ||    || |  |      |   ||   | |||  ||  ||         |  |   ||  |||  ||                                                                        
AGGGATGTACATATCATGAATGCCGCCTTGGAGCAGCATTTGTACCAGAGTTGGAAGGGAAATTTTTGGCGACAGAAAACTTTTACCATACTTCAAAGgtccaattc---tttctctaccgttgggggctttcagaaaggggattaaatttgaacatactgcatgcataatgataggagtcttctcttcggatcaagattgtccattttcttttatgttcagtattctacaatctttagtacatgttcatttgatatttgattgcttaacag

upper sequence: LOC_Os08g33850.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G152457_T05 (Zea mays), 5'ss of exon 6
AGGAATGTAGGTACCATGAATGCCGTATGGGAGCAGCATTTGTACCAGACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAGgtttatttcccctttctccctcctcctggttggccatttgggtgtctttcaaagtgtatttggtatgtgtagggaagacgagaattccaaagg--caacctt-
||| |||||  || |||||||||||  | ||||||||||||||||||||  | || ||||||||||| || ||||| || || ||||||||||| |||||  | |||   ||||||   | |   ||     ||    || |  |      |   ||   | |||  ||  ||         |  |   ||  |||  || 
AGGGATGTACATATCATGAATGCCGCCTTGGAGCAGCATTTGTACCAGAGTTGGAAGGGAAATTTTTGGCGACAGAAAACTTTTACCATACTTCAAAGgtccaattc---tttctctaccgttgggggctttcagaaaggggattaaatttgaacatactgcatgcataatgataggagtcttctcttcggatcaagattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38482258|gb|CF966306.1|CF966306
EST:     ACCTTGATGGGAAATGGTTAGCAACAGAGAATTTCTACCATACTTCCAAG                         TTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGG
genomic: ACCTTGATGGGAAATTTTTAGCAACAGAGAATTTCTACCATACTTCCAAGgtttatttcc ... tacttggcagTTCTTTAGGTTGCGTTCTAAGTCTTTTCTTTCTGACCTGATGCTGGCTGGG