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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTACACGAATCCATATCTTCCTGTGAATCCAACAGCAATCGAGGGAATCGCACAGgtatgctttaacatttcatactattcgttgtgttctttctctccttccttacagtggaggttatgcag

Basic information

species Oryza sativa
transcript LOC_Os08g33830.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 6
GGATTACACGAATCCATATCTTCCTGTGAATCCAACAGCAATCGAGGGAATCGCACAGgtatgctttaacatttcatactattcgttgtgttctttctc------tccttccttacagtggaggttatgcag--------------------------
||||||||| ||||| || ||||||||||| | ||||||||| ||||| || |  ||||||||||| |    ||||||      | ||| |     | |       || |||   |  |  |  || ||  |                          
GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAGgtatgcttcatatgttcatatctcatgatgtttcaccccccaacccacccctcccccctttttaatttttgttgctcttactctaaaggaaaatttgcag

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv14s0108g01030.t01 (Vitis vinifera), 5'ss of exon 6
GGATTACACGAATCCATATCTTCCTGTGAATCCAACAGCAATCGAGGGAATCGCACAGgtatgcttta-acatttcatactattcgttgtgttctttctctccttccttacagtggaggttatgcag
||| ||||| |||||||| |||||||||||||| || ||||| |||||||| |||||||||   |||  ||| || |   ||||  |||   | |||  |    | || ||||       ||| |||
GGACTACACAAATCCATACCTTCCTGTGAATCCTACTGCAATTGAGGGAATAGCACAGgtaaattttttacagttga--atatttattgaaat-ttttaccatgtactaacaggttgttctatccag