1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAGgttagtccctggccttagatgatttttgaatacttatttgctagtgctttttacctcttttcagatgcagtaactagccgcttttatgtttattgcatgt...
species | Oryza sativa |
transcript | LOC_Os08g28730.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAG GGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGAEST: gi|29673347|gb|CB669622.1|CB669622
genomic: TGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAGgttagtccct ... gtacttgcagGGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGA
EST: TGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAG GGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGAEST: gi|58686188|gb|CK074875.1|CK074875
genomic: TGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAGgttagtccct ... gtacttgcagGGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGA
EST: TGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAG GGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGAEST: gi|58606565|gb|CK034598.1|CK034598
genomic: TGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAGgttagtccct ... gtacttgcagGGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGA
EST: GATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCACGCATAG GGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGEST: gi|29682808|gb|CB679083.1|CB679083
genomic: GATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCA-GCATAGgttagtccct ... gtacttgcagGGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAG
EST: GCATTGCAGAAACTCTTTGAGAGCTCCAGCATAG GGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGA
genomic: GCATTGCAGAAACTCTTTGAGAGCTCCAGCATAGgttagtccct ... gtacttgcagGGTGTGAAGCATACAACCTTGGAACTGGTAAAGGTACCTCTGTGCTGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCATTGCAGAAACTCTTTGAGAGCTCCAGCATAGgttagtccctggccttagatgatttttgaatacttatttgctagtgctttttacctcttttcagatgcagtaactagccgcttttatgtttattgcatgt
- - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT