1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGTCTATGTGGCGATGCAATGATGAGCTTCGGGCACGAGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcgactacccattttaatagtgatggctatctgttatgattgacaatgttggcataatatcgtttccttgttcgtcttag
species | Oryza sativa |
transcript | LOC_Os08g27840.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTGEST: gi|29629554|gb|CB634563.1|CB634563
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTGEST: gi|88456811|gb|CI695152.1|CI695152
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCEST: gi|29629584|gb|CB634593.1|CB634593
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTC
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTGEST: gi|88328745|gb|CI678548.1|CI678548
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATCCTGGAAGAAGEST: gi|29635424|gb|CB640433.1|CB640433
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTGEST: gi|88463602|gb|CI696070.1|CI696070
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGEST: gi|29634929|gb|CB639938.1|CB639938
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTGEST: gi|88391962|gb|CI683782.1|CI683782
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
EST: AGCAGATGAGCTGNATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGEST: gi|29630865|gb|CB635874.1|CB635874
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTGEST: gi|29629203|gb|CB634214.1|CB634214
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
EST: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAG AATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
genomic: AGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcg ... ttcgtcttagAATTCTGGAAGAAGGTTCCGCCCAGTGAGCCATACCGAGTTGTTCTAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCTATGTGGCGATGCAATGATGAGCTTCGGGCACGAGCAGATGAGCTGCATCTCTCCTCAAAGAAAGATGCAAAGCACTATATAGgtaaatatcgactacccattttaatagtgatggctatctgttatgattgacaatgttggcataatatcgtttccttgttcgtcttag
- - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG