Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaatacacaactcaattcatttcactggttattagaaaatacaaaaacaaaataagcacctttctcacctttcatgatcctaatgaaatttctgactgatttcctgacacatgatgtag

Basic information

species Oryza sativa
transcript LOC_Os08g25624.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g25624.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G174107_T02 (Zea mays), 5'ss of exon 6
TCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaatacacaactcaa--ttcatttcactggttattagaaaatacaaaaacaaaataagcacctttctcacctttcatgatcctaatgaaatttctgactgatttcctgacacatgatgtag
||| ||||| ||||| || |||||||||||||||||||||||||||||| ||||| | ||||||||  ||||||| ||||||||| |||||||||||||||| |||   |||    ||||  || |   || || | |   |||| ||  ||| ||| | | | | ||    |||||| ||  |   | |                                    
TCTCTTCTCTATCATTACAGTGATGTCATTTTTCCTTTTGGCCCCTGTTACCTTCTTTACAGAAGGTGTCAAAATTACTCCTACATTTTTGCAATCTGCTgtaagtgtaacaatgttcaaatttaaacccattgctcac--gaaagtaagaaatcaagacaggaaactg---caccttgcagaactgtcag-----------------------------------

upper sequence: LOC_Os08g25624.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G174107_T01 (Zea mays), 5'ss of exon 6
TCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaatacacaactcaa--ttcatttcactggttattagaaaatacaaaaacaaaataagcacctttctcacctttcatgatcctaatgaa-atttctgactgatttcctgacacatgatgtag
||| ||||| ||||| || |||||||||||||||||||||||||||||| ||||| | ||||||||  ||||||| ||||||||| |||||||||||||||| |||   |||    ||||  || |   || || | |   |||| ||  ||| ||| | | | | ||    |||||| ||  |   | | |   | || ||| ||  ||  ||        |||||
TCTCTTCTCTATCATTACAGTGATGTCATTTTTCCTTTTGGCCCCTGTTACCTTCTTTACAGAAGGTGTCAAAATTACTCCTACATTTTTGCAATCTGCTgtaagtgtaacaatgttcaaatttaaacccattgctcac--gaaagtaagaaatcaagacaggaaactg---caccttgcagaactgtcagggttaattttgattggctttgtgtt------tgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55409510|gb|CV721886.1|CV721886
EST:     CCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCT                         GGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGT
genomic: CCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaata ... catgatgtagGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCACTTTGT
EST: gi|58610772|gb|CK038484.1|CK038484
EST:     CCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCT                         GGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCA
genomic: CCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaata ... catgatgtagGGTCTGAATGTAAAACAGGTGCTTACAAGGTCTTTACTTGCTGCA