Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaatacacaactcaattcatttcactggttattagaaaatacaaaaacaaaataagcacctttctcacctttcatgatcctaatgaaatttctgactgatttcctgacacatgatgtagggtctgaatgtaaaacag

Basic information

species Oryza sativa
transcript LOC_Os08g25624.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g25624.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G174107_T02 (Zea mays), 5'ss of exon 6
TCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaatacacaactcaa--ttcatttcactggttattagaaaatacaaaaacaaaataagcacctttctcacctttcatgatcctaatgaaatttctgactgatttcctgacacatgatgtagggtctgaatgtaaaacag
||| ||||| ||||| || |||||||||||||||||||||||||||||| ||||| | ||||||||  ||||||| ||||||||| |||||||||||||||| |||   |||    ||||  || |   || || | |   |||| ||  ||| ||| | | | | ||    |||||| ||  |   | |                                                      
TCTCTTCTCTATCATTACAGTGATGTCATTTTTCCTTTTGGCCCCTGTTACCTTCTTTACAGAAGGTGTCAAAATTACTCCTACATTTTTGCAATCTGCTgtaagtgtaacaatgttcaaatttaaacccattgctcac--gaaagtaagaaatcaagacaggaaact---gcaccttgcagaactgtcag-----------------------------------------------------

upper sequence: LOC_Os08g25624.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G174107_T01 (Zea mays), 5'ss of exon 6
TCTTTTCTCAATCATAACTGTGATGTCATTTTTCCTTTTGGCCCCTGTTGCCTTCCTAACAGAAGGCATCAAAATCACTCCTACAGTTTTGCAATCTGCTgtgagtaatacacaactcaa--ttcatttcactggttattagaaaatacaaaaacaaaataagcacctttctcacctttcatgatcctaatgaa-atttctgactgatttcctgacacatgatgtagggtctgaatgtaaaacag
||| ||||| ||||| || |||||||||||||||||||||||||||||| ||||| | ||||||||  ||||||| ||||||||| |||||||||||||||| |||   |||    ||||  || |   || || | |   |||| ||  ||| ||| | | | | ||    |||||| ||  |   | | |   | || ||| ||  ||  ||        |||||                  
TCTCTTCTCTATCATTACAGTGATGTCATTTTTCCTTTTGGCCCCTGTTACCTTCTTTACAGAAGGTGTCAAAATTACTCCTACATTTTTGCAATCTGCTgtaagtgtaacaatgttcaaatttaaacccattgctcac--gaaagtaagaaatcaagacaggaaact---gcaccttgcagaactgtcagggttaattttgattggctttgtgtt------tgtag------------------