1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGATTTCATTTAGGTGCATTTGCTTATTGGCTGCTTGCCTTCAACTGGCAGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaaaccattctgggtctcatacactgttgttaattttgtgtgcttaaattggtttcaaacgtactccggtgctacatttttctgcatgtggtt...
species | Oryza sativa |
transcript | LOC_Os08g15040.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGATGAGCTAAAA-GTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|89162128|gb|CI103664.1|CI103664
genomic: AGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: TATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|88239417|gb|CI240579.1|CI240579
genomic: TATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: AGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|86434337|gb|CI094680.1|CI094680
genomic: AGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: AGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTCEST: gi|86511016|gb|CI153649.1|CI153649
genomic: AGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
EST: AGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAG GATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
genomic: AGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaa ... atgaatgcagGATCTTCCAGGTGCACTTGATGATGCTGCCATAACGGAATCATTAGAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATTTCATTTAGGTGCATTTGCTTATTGGCTGCTTGCCTTCAACTGGCAGGAGGATGAGCTAAAAGGTGCAGTTGTCCTTGTATATGCGAATAAACAGgtaaaaccaaaccattctgggtctcatacactgttgttaattttgtgtgcttaaattggtttcaaacgtactccggtgctacatttttctgcatgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG