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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATTCGCGACGGTGTTCTCGAGCATCGTGTCGAGAGCGTCCACGCACGAGGTGTTGTCCACAGGCGTGGCAGGCAACTACAATGGTGCACTGCAAGTGgtacgtacacgtcttcttcatcctcatcgactactcgatcaactccttaattaatctgttcatggcacgcctccaattccatgctccatggatatattctggaattaatccaccagatatatgatgatctaaacattatcggttgcag

Basic information

species Oryza sativa
transcript LOC_Os08g08820.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08820.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G130442_T02 (Zea mays), 5'ss of exon 5
TCAATTCGCGACGGTGTTCTCGAGCATCGTGTCGAGAGCGTCCACGCACGAGGTGTTGTCCACAGGCGTGGCAGGCAACTACAATGGTGCACTGCAAGTGgtacgtacacgtcttcttcatcctcatcgactactcgatcaactccttaattaatctgttcatggcacgcctccaattccatgctccatggatatattctggaattaatccaccagatatatgatgatctaaacattatcggttgcag
 | ||||||| | ||||||||||||||||||||||| || ||||||||||||||| |||| || || |||||||| | ||||||||||||| | ||||||||  |||      |  | ||| |   | ||   |  |   | |    |   | ||| ||         |  || || |  ||     ||| | |    |    | |||  ||    |||  |    || |     || |   ||||||
CCGATTCGCGGCAGTGTTCTCGAGCATCGTGTCGAGGGCTTCCACGCACGAGGTGCTGTCAACTGGTGTGGCAGGGAGCTACAATGGTGCATTACAAGTGgtgtgta------tcttccattcctgttgagggcctg--tagcattgtccctgatcagta--------gtgtcaaagtatat-----atgaagagtgacgatgactaa--caatgtataggttgccatttttttttttttt-ttgcag

upper sequence: LOC_Os08g08820.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G118063_T03 (Zea mays), 5'ss of exon 6
TCAATTCGCGACGGTGTTCTCGAGCATCGTGTCGAGAGCGTCCACGCACGAGGTGTTGTCCACAGGCGTGGCAGGCAACTACAATGGTGCACTGCAAGTGgtacgtacacgtcttcttcatcctcatcgactactcgatcaactccttaattaat-ctgttca--tggcacgcctccaattccatgctccatggatatattctggaattaatccaccagatatatgatgatctaaacattatcggttgcag
 | ||| ||  | |||||||| |||||||||||||| || || ||||||||||||||||| || || |||||||| | ||||||||||||| ||||||||||  ||||       ||  |   |  |  | | | |||     |  | ||||||| || |  |  || || |  |        ||  || |     |                                                      
CCGATTTGCTGCAGTGTTCTCAAGCATCGTGTCGAGGGCTTCTACGCACGAGGTGTTGTCAACCGGTGTGGCAGGGAGCTACAATGGTGCATTGCAAGTGgtgggtac-------ctcgacaatggtgcattgcacgaggtgttgatcaattaatactatgtagctgacaagattattggctaatcatcaacttgcag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87006799|gb|CI285833.1|CI285833
EST:     ACAATGGTGCACTGCAAGTG                         ATGTCAATGGAGTTTCAAGTGCCGTCGCCGCTGGTGCCGACGAGGGAGAGC
genomic: ACAATGGTGCACTGCAAGTGgtacgtacac ... tcggttgcagATGTCAATGGAGTTTCAAGTGCCGTCGCCGCTGGTGCCGACGAGGGAGAGC