1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGgttggtctttgtgaacatcgcacatgtccattaaaaatgaataatggggatcactcgtttttcatctgcaacttctcatattgaactgagtgtttttattgtttcctgttttggtcattag
species | Oryza sativa |
transcript | LOC_Os08g07960.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAG ACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTANGTGTCTTEST: gi|218501857|gb|FG946082.1|FG946082
genomic: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGgttggtcttt ... tggtcattagACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGTGTCTT
EST: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAG ACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGTGTCTTEST: gi|29615879|gb|CB620891.1|CB620891
genomic: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGgttggtcttt ... tggtcattagACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGTGTCTT
EST: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAG ACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTEST: gi|33795033|gb|CF323392.1|CF323392
genomic: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGgttggtcttt ... tggtcattagACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACT
EST: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAG ACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGGGTGTCT
genomic: TGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGgttggtcttt ... tggtcattagACGGAGTTCAAGCGCATCCAATCGCCACTCAAATACCAGACTAGG-TGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTCCTGAGCGCTGTTACGCACTTACAGTGAATTATCCCCTTATGATTGTGGGAACTGCTGATCGTAATCTGGTCGTCTTCAACTTGCAGAATCCTCAGgttggtctttgtgaacatcgcacatgtccattaaaaatgaataatggggatcactcgtttttcatctgcaacttctcatattgaactgagtgtttttattgtttcctgttttggtcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT