1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCCAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGgtataaacagttctgttttaactccatgaaactagtctcatgcgctggttacaacttacaactggtcagactggtacagttgtgtgaccattggcttggttccttgattgcag
species | Oryza sativa |
transcript | LOC_Os08g07880.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAG-AGTTATCGAAAG GCGA-TGATGAAGGCCTA-TGCTGAAACTTCCTTTCACCACTATCTTTGAGEST: gi|38475745|gb|CF959878.1|CF959878
genomic: CAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGgtataaacag ... ttgattgcagGCGATTGATGAAGGCCTATTGCTGAAACTTCCTTTCACCACTATCTTTGAG
EST: CAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATC-GAAG AEST: gi|38475745|gb|CF959878.1|CF959878
genomic: CAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGgtataaacag ... ttgattgcag-
EST: CAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATC-GAAG A
genomic: CAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGgtataaacag ... ttgattgcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAGAATCTCATGCCGCGGTTGTCAAGACAGCAATAAGAAATTATCGGAAGgtataaacagttctgttttaactccatgaaactagtctcatgcgctggttacaacttacaactggtcagactggtacagttgtgtgaccattggcttggttccttgattgcag
- - - - - - - - - - - - - - - - - - AAGAAA