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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAGACAGTGTAAAGAGTTTAATATTCCTACTGACTGGATGCTCGACAACAATCTTATTGGCAAGgtatatgttctataattttccgtatttgaaggtttgatttcttagtgctacattgttgtcagcatatgatacaggaaatgacctagtcagaattatgatg...

Basic information

species Oryza sativa
transcript LOC_Os08g03560.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g03560.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G019225_T01 (Zea mays), 5'ss of exon 7
TGTCTACAATCTTCTGAGGACAAGGGATGCTACGATGAGACAGTGTAAAGAGTTTAATATTCCTACTGACTGGATGCTCGACAACAATCTTATTGGCAAGgtatatgttctataattttccgtatttgaa-ggtttgatttcttagtgctacattgttgtcagcatatgatacaggaaatgacctagtcagaattatg-atg
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TGTCTACAGCCTTCTAAGGACAAGAGATGCTATGATGAGGCAGTGCAAGGAGTTCAATATCCCTACAGACTGGATGCTTGATAACAATCTTATTAGCAAGgtaaatattatgtgtcggactgcccttctctggtttatttacataaatcatgagtgtgcgctcccattaggcctggaaactac--agatggccttgcacatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33808425|gb|CF330101.1|CF330101
EST:     AGTTTAATATTCCTACTGACTGGATGCTCGACAACAATCTTATTGGCAAG                         ATAAAATTTTCTTCTGTCAAATTAGCAAAGATGTACATGAAAAGAGTTGCT
genomic: AGTTTAATATTCCTACTGACTGGATGCTCGACAACAATCTTATTGGCAAGgtatatgttc ... ataactgcagATAAAATTTTCTTCTGTCAAATTAGCAAAGATGTACATGAAAAGAGTTGCT
EST: gi|33811209|gb|CF331494.1|CF331494
EST:     AGTTTAATATTCCTACTGACTGGATGCTCGACAACAATCTTATTGGCAAG                         ATAAAATTTTCTTCTGTCAAATTAGCAAAGATGTACATGAAAAGAGTTGCT
genomic: AGTTTAATATTCCTACTGACTGGATGCTCGACAACAATCTTATTGGCAAGgtatatgttc ... ataactgcagATAAAATTTTCTTCTGTCAAATTAGCAAAGATGTACATGAAAAGAGTTGCT